miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 12221 0.66 0.614974
Target:  5'- cUCgACGGCUugaaugcgcagAUCGCGCuCAUGACgACUg -3'
miRNA:   3'- -AGgUGCCGA-----------UGGCGUG-GUACUG-UGGg -5'
17059 5' -56.6 NC_004333.2 + 14724 0.66 0.614974
Target:  5'- gCC-CGGCgcGCCGCuGCCAauGCugCCg -3'
miRNA:   3'- aGGuGCCGa-UGGCG-UGGUacUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 15718 0.66 0.625941
Target:  5'- gCUGCGGCUcgucGCgGCGCUgaagGGCGCCg -3'
miRNA:   3'- aGGUGCCGA----UGgCGUGGua--CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 21635 0.66 0.625941
Target:  5'- -gCGCgGGCUccgugcaguucGCCGCACCugucGGCGCgCCg -3'
miRNA:   3'- agGUG-CCGA-----------UGGCGUGGua--CUGUG-GG- -5'
17059 5' -56.6 NC_004333.2 + 34748 0.66 0.625941
Target:  5'- aUCCAUgaucaGGCguucgGCCGCGC----GCACCCg -3'
miRNA:   3'- -AGGUG-----CCGa----UGGCGUGguacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 42407 0.66 0.636914
Target:  5'- -gCGagaGGCUAUCG-ACCGUGACAUUCc -3'
miRNA:   3'- agGUg--CCGAUGGCgUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 28601 0.66 0.593093
Target:  5'- aUCGCGcGCgauuccccuugUGCCGCGCCGaccgugcgaccGGCGCCCa -3'
miRNA:   3'- aGGUGC-CG-----------AUGGCGUGGUa----------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 47470 0.66 0.593093
Target:  5'- gCCACGGCgcucgcgggcgGCgGCACgAUcGCGCUCa -3'
miRNA:   3'- aGGUGCCGa----------UGgCGUGgUAcUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 21017 0.66 0.593093
Target:  5'- -nCAUGGCUGaucgCGCGCC--GACACCa -3'
miRNA:   3'- agGUGCCGAUg---GCGUGGuaCUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 33987 0.66 0.593093
Target:  5'- gUCAU-GCUGCCGCAUCccGACgagcgACCCg -3'
miRNA:   3'- aGGUGcCGAUGGCGUGGuaCUG-----UGGG- -5'
17059 5' -56.6 NC_004333.2 + 1271 0.66 0.593093
Target:  5'- cUCGCGGC-GCUGCAgCAUGaacagcagGCGCUCg -3'
miRNA:   3'- aGGUGCCGaUGGCGUgGUAC--------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 47476 0.67 0.560539
Target:  5'- cCgGCGGCgacUGCCGCGCUgaacgaGGCGCCg -3'
miRNA:   3'- aGgUGCCG---AUGGCGUGGua----CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 36443 0.67 0.571344
Target:  5'- gCCGguCGGCUGCCGgACaucgcgcagGACGCCa -3'
miRNA:   3'- aGGU--GCCGAUGGCgUGgua------CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 2787 0.67 0.571344
Target:  5'- gUCUGCGGCcuUGCCG-ACC-UGGCGCUg -3'
miRNA:   3'- -AGGUGCCG--AUGGCgUGGuACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 19950 0.67 0.528497
Target:  5'- gUCACGGUcACgugaCGCGCCcgGACGCgCa -3'
miRNA:   3'- aGGUGCCGaUG----GCGUGGuaCUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 38323 0.67 0.560539
Target:  5'- uUCCuGCGGUUACCGCuacgugcCCGUcauGCGCUCa -3'
miRNA:   3'- -AGG-UGCCGAUGGCGu------GGUAc--UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 20987 0.67 0.549791
Target:  5'- -gCACGGuCUGCCGCcacACCucgggGGCACgCa -3'
miRNA:   3'- agGUGCC-GAUGGCG---UGGua---CUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 17557 0.67 0.549791
Target:  5'- gCCGC-GCUGCUGCACgAccUGGCGUCCg -3'
miRNA:   3'- aGGUGcCGAUGGCGUGgU--ACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 18169 0.67 0.539108
Target:  5'- aUCCcgacgaGCGGC-GCCGCAUgGUGcucGCGCUCg -3'
miRNA:   3'- -AGG------UGCCGaUGGCGUGgUAC---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 6520 0.67 0.539108
Target:  5'- cUCCuugcCGGCguacgGCCGCAgCCc--GCGCCCg -3'
miRNA:   3'- -AGGu---GCCGa----UGGCGU-GGuacUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.