miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 17557 0.67 0.549791
Target:  5'- gCCGC-GCUGCUGCACgAccUGGCGUCCg -3'
miRNA:   3'- aGGUGcCGAUGGCGUGgU--ACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38708 0.67 0.571344
Target:  5'- cUCgGCGGCggUGCgGCACCc--GCGCCUg -3'
miRNA:   3'- -AGgUGCCG--AUGgCGUGGuacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 15461 0.67 0.571344
Target:  5'- cUCGcCGGCUAUCGCuGCCGUGuuaaACUCg -3'
miRNA:   3'- aGGU-GCCGAUGGCG-UGGUACug--UGGG- -5'
17059 5' -56.6 NC_004333.2 + 18169 0.67 0.539108
Target:  5'- aUCCcgacgaGCGGC-GCCGCAUgGUGcucGCGCUCg -3'
miRNA:   3'- -AGG------UGCCGaUGGCGUGgUAC---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 6520 0.67 0.539108
Target:  5'- cUCCuugcCGGCguacgGCCGCAgCCc--GCGCCCg -3'
miRNA:   3'- -AGGu---GCCGa----UGGCGU-GGuacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 19950 0.67 0.528497
Target:  5'- gUCACGGUcACgugaCGCGCCcgGACGCgCa -3'
miRNA:   3'- aGGUGCCGaUG----GCGUGGuaCUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 19197 0.67 0.571344
Target:  5'- aCC-CGGCgGCCGCGCaacUGAuCGCCg -3'
miRNA:   3'- aGGuGCCGaUGGCGUGgu-ACU-GUGGg -5'
17059 5' -56.6 NC_004333.2 + 47476 0.67 0.560539
Target:  5'- cCgGCGGCgacUGCCGCGCUgaacgaGGCGCCg -3'
miRNA:   3'- aGgUGCCG---AUGGCGUGGua----CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 2787 0.67 0.571344
Target:  5'- gUCUGCGGCcuUGCCG-ACC-UGGCGCUg -3'
miRNA:   3'- -AGGUGCCG--AUGGCgUGGuACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 3213 0.68 0.476732
Target:  5'- gCC-CGGCgcGCCGCccGCCccgAUGACGCCg -3'
miRNA:   3'- aGGuGCCGa-UGGCG--UGG---UACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 2955 0.68 0.507514
Target:  5'- cCUGCaGCUG-CGCGagCGUGACGCCCg -3'
miRNA:   3'- aGGUGcCGAUgGCGUg-GUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 39631 0.68 0.486894
Target:  5'- aUCCuaGCGGCcgACUGCugCcgGACGCg- -3'
miRNA:   3'- -AGG--UGCCGa-UGGCGugGuaCUGUGgg -5'
17059 5' -56.6 NC_004333.2 + 9627 0.68 0.507514
Target:  5'- -gCAcCGGCUGCCggcggcGCGCCu--GCGCCCg -3'
miRNA:   3'- agGU-GCCGAUGG------CGUGGuacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38578 0.68 0.486894
Target:  5'- -aC-CGGCcgaUGCCGCGCCGgcUGGCGCUg -3'
miRNA:   3'- agGuGCCG---AUGGCGUGGU--ACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 45392 0.68 0.466678
Target:  5'- gCCAgguCGGCaagGCCGCagACC-UGGCACUCg -3'
miRNA:   3'- aGGU---GCCGa--UGGCG--UGGuACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 22613 0.68 0.465678
Target:  5'- gUCCGuCGGgUucgUCGCGCCugugcgcuggaugAUGACGCCCa -3'
miRNA:   3'- -AGGU-GCCgAu--GGCGUGG-------------UACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 25427 0.68 0.486894
Target:  5'- cCgGCGGCgGCCGUcacgccgggcguGCCGguuacgacGACACCCg -3'
miRNA:   3'- aGgUGCCGaUGGCG------------UGGUa-------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 18842 0.68 0.480784
Target:  5'- -gCGCGGCaguacgcaguUGCCGUgcgcaacgcauugccGCCggGGCGCCCa -3'
miRNA:   3'- agGUGCCG----------AUGGCG---------------UGGuaCUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 27174 0.68 0.497156
Target:  5'- cCCgugACGGCUGCCacGCGCUcgaaacGCACCCa -3'
miRNA:   3'- aGG---UGCCGAUGG--CGUGGuac---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 54 0.68 0.497156
Target:  5'- uUCgACGGUcaccaUGCCgGCGCgGUGcgcGCGCCCg -3'
miRNA:   3'- -AGgUGCCG-----AUGG-CGUGgUAC---UGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.