Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17059 | 5' | -56.6 | NC_004333.2 | + | 36169 | 0.71 | 0.347257 |
Target: 5'- aUCCggAUGaGCUGCCGCAuCCGUuGCACCg -3' miRNA: 3'- -AGG--UGC-CGAUGGCGU-GGUAcUGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 26113 | 0.7 | 0.399608 |
Target: 5'- uUCCugGcGCUA-CGCGCCGUGcACgaucuguccGCCCg -3' miRNA: 3'- -AGGugC-CGAUgGCGUGGUAC-UG---------UGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 41420 | 0.7 | 0.364151 |
Target: 5'- aCCucgaGGCgcgcgACCgggGCGCCGUGGCGCUCg -3' miRNA: 3'- aGGug--CCGa----UGG---CGUGGUACUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 19787 | 0.7 | 0.371937 |
Target: 5'- gCgGCGGUUAuugguucCCGCACCgccGUGGCugCCu -3' miRNA: 3'- aGgUGCCGAU-------GGCGUGG---UACUGugGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 45002 | 0.7 | 0.399608 |
Target: 5'- aCCACGGCgcgcuguccgGCCGCucgaccGCgCGUGGCGCUg -3' miRNA: 3'- aGGUGCCGa---------UGGCG------UG-GUACUGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 24921 | 0.69 | 0.437195 |
Target: 5'- gUCACGGUUGUCGUACCcUGaccggagaagcGCACCCg -3' miRNA: 3'- aGGUGCCGAUGGCGUGGuAC-----------UGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 35865 | 0.69 | 0.456734 |
Target: 5'- cCCGCgcgaGGCUGgCGCGCag-GACGCCg -3' miRNA: 3'- aGGUG----CCGAUgGCGUGguaCUGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 27083 | 0.69 | 0.456734 |
Target: 5'- aCCgACGGCguucgugaaGCCGCACgucgcauaguUGGCGCCCa -3' miRNA: 3'- aGG-UGCCGa--------UGGCGUGgu--------ACUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 43204 | 0.69 | 0.437195 |
Target: 5'- -aUAUGcGCUGCCGCaaggcucgGCCAUuGCGCCCu -3' miRNA: 3'- agGUGC-CGAUGGCG--------UGGUAcUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 38393 | 0.69 | 0.437195 |
Target: 5'- aUgACGGCUAuCCGUggcaACCAugUGGCGCUCg -3' miRNA: 3'- aGgUGCCGAU-GGCG----UGGU--ACUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 6449 | 0.69 | 0.40881 |
Target: 5'- cCCGCGccgaucuccucGUUgAUCGCGCCGUGcCGCCCg -3' miRNA: 3'- aGGUGC-----------CGA-UGGCGUGGUACuGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 8868 | 0.69 | 0.427606 |
Target: 5'- aUCGCGGCUGCgGCGCgGUuagccgcGCACCUu -3' miRNA: 3'- aGGUGCCGAUGgCGUGgUAc------UGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 45126 | 0.69 | 0.40881 |
Target: 5'- -gCGCGGCgAUCGCGCCuaccUGucguCGCCCg -3' miRNA: 3'- agGUGCCGaUGGCGUGGu---ACu---GUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 34274 | 0.69 | 0.40881 |
Target: 5'- gCCACGGCagccGCCGCGcagcCCGUGcCGgCCg -3' miRNA: 3'- aGGUGCCGa---UGGCGU----GGUACuGUgGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 9469 | 0.69 | 0.40881 |
Target: 5'- -gCGCGGgUGCCGCACCGc--CGCCg -3' miRNA: 3'- agGUGCCgAUGGCGUGGUacuGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 22066 | 0.69 | 0.40881 |
Target: 5'- -gCACGGCgcguaGCGCCAggaaagaGGCGCCCa -3' miRNA: 3'- agGUGCCGaugg-CGUGGUa------CUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 54 | 0.68 | 0.497156 |
Target: 5'- uUCgACGGUcaccaUGCCgGCGCgGUGcgcGCGCCCg -3' miRNA: 3'- -AGgUGCCG-----AUGG-CGUGgUAC---UGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 27174 | 0.68 | 0.497156 |
Target: 5'- cCCgugACGGCUGCCacGCGCUcgaaacGCACCCa -3' miRNA: 3'- aGG---UGCCGAUGG--CGUGGuac---UGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 46892 | 0.68 | 0.497156 |
Target: 5'- aUCGCGuaacGCaACCGCGCCAggcGGCGCgCCa -3' miRNA: 3'- aGGUGC----CGaUGGCGUGGUa--CUGUG-GG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 38578 | 0.68 | 0.486894 |
Target: 5'- -aC-CGGCcgaUGCCGCGCCGgcUGGCGCUg -3' miRNA: 3'- agGuGCCG---AUGGCGUGGU--ACUGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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