miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 20818 1.13 0.000352
Target:  5'- uUCCACGGCUACCGCACCAUGACACCCa -3'
miRNA:   3'- -AGGUGCCGAUGGCGUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 29630 0.79 0.102525
Target:  5'- gCCGCgccGGCUGCCGCACCcgGGUugCCg -3'
miRNA:   3'- aGGUG---CCGAUGGCGUGGuaCUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 20488 0.76 0.168934
Target:  5'- gUCCcgGCGGCUGCCGCGCaaccGCugCCg -3'
miRNA:   3'- -AGG--UGCCGAUGGCGUGguacUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 8693 0.75 0.193304
Target:  5'- -gCACGGCgaacgUGCCG-ACCGUGACGCCg -3'
miRNA:   3'- agGUGCCG-----AUGGCgUGGUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 31119 0.75 0.198533
Target:  5'- -gCGCGGCUggaacACCGCGagCAUGACGCCa -3'
miRNA:   3'- agGUGCCGA-----UGGCGUg-GUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 33943 0.74 0.209363
Target:  5'- gUCUACGccagACgGCACCGUGAUGCCCg -3'
miRNA:   3'- -AGGUGCcga-UGgCGUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 24251 0.74 0.214966
Target:  5'- uUCCACGGUgUGCCGC-CCGUcGAaaagaACCCg -3'
miRNA:   3'- -AGGUGCCG-AUGGCGuGGUA-CUg----UGGG- -5'
17059 5' -56.6 NC_004333.2 + 21737 0.74 0.220119
Target:  5'- gCCAgguCGGCacGCCGCacaauugACCAUGACGCCUa -3'
miRNA:   3'- aGGU---GCCGa-UGGCG-------UGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38916 0.74 0.220698
Target:  5'- aUCCGCagaaGGCUauGCCGCACgCGgcgaGGCGCCCc -3'
miRNA:   3'- -AGGUG----CCGA--UGGCGUG-GUa---CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 44278 0.74 0.232552
Target:  5'- gCCugGcGCUACCacgaCACCAUGACcaauCCCg -3'
miRNA:   3'- aGGugC-CGAUGGc---GUGGUACUGu---GGG- -5'
17059 5' -56.6 NC_004333.2 + 14843 0.73 0.238678
Target:  5'- aCCACGGCgUGCCG-AUCAgaaUGACGCCg -3'
miRNA:   3'- aGGUGCCG-AUGGCgUGGU---ACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 39306 0.73 0.244938
Target:  5'- -gCGCGGCUaACCGCGCCGcagccgcGAUACCUu -3'
miRNA:   3'- agGUGCCGA-UGGCGUGGUa------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 16889 0.73 0.251333
Target:  5'- -gCACGGCcgACUGCcugaucugguGCCcgGGCGCCCg -3'
miRNA:   3'- agGUGCCGa-UGGCG----------UGGuaCUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 8138 0.73 0.257866
Target:  5'- gUCUugcgaGGCguCCGCGCCGUGGCGCCg -3'
miRNA:   3'- -AGGug---CCGauGGCGUGGUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 14286 0.73 0.257866
Target:  5'- -aCACGGCaACCGCACCGcUGuCGCUg -3'
miRNA:   3'- agGUGCCGaUGGCGUGGU-ACuGUGGg -5'
17059 5' -56.6 NC_004333.2 + 6599 0.71 0.315178
Target:  5'- gCCACGGCgcGCCGC-CCA--GCGCCg -3'
miRNA:   3'- aGGUGCCGa-UGGCGuGGUacUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 22114 0.71 0.322983
Target:  5'- gCCGCcGCUGCgGCGCCAcUGGCAaaUCCg -3'
miRNA:   3'- aGGUGcCGAUGgCGUGGU-ACUGU--GGG- -5'
17059 5' -56.6 NC_004333.2 + 6048 0.71 0.330932
Target:  5'- gCCAUGGCUuCCGCGCUuUGagaacaucGCAUCCg -3'
miRNA:   3'- aGGUGCCGAuGGCGUGGuAC--------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 13911 0.71 0.339023
Target:  5'- gCgGCGGCUGCCGUggcgAUCGUGgccGCugCCg -3'
miRNA:   3'- aGgUGCCGAUGGCG----UGGUAC---UGugGG- -5'
17059 5' -56.6 NC_004333.2 + 36169 0.71 0.347257
Target:  5'- aUCCggAUGaGCUGCCGCAuCCGUuGCACCg -3'
miRNA:   3'- -AGG--UGC-CGAUGGCGU-GGUAcUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.