miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 31284 0.71 0.355634
Target:  5'- aCCAugcCGGCgagaccgGCCGCACCugcgccGACGCCg -3'
miRNA:   3'- aGGU---GCCGa------UGGCGUGGua----CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 41420 0.7 0.364151
Target:  5'- aCCucgaGGCgcgcgACCgggGCGCCGUGGCGCUCg -3'
miRNA:   3'- aGGug--CCGa----UGG---CGUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 19787 0.7 0.371937
Target:  5'- gCgGCGGUUAuugguucCCGCACCgccGUGGCugCCu -3'
miRNA:   3'- aGgUGCCGAU-------GGCGUGG---UACUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 45002 0.7 0.399608
Target:  5'- aCCACGGCgcgcuguccgGCCGCucgaccGCgCGUGGCGCUg -3'
miRNA:   3'- aGGUGCCGa---------UGGCG------UG-GUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 26113 0.7 0.399608
Target:  5'- uUCCugGcGCUA-CGCGCCGUGcACgaucuguccGCCCg -3'
miRNA:   3'- -AGGugC-CGAUgGCGUGGUAC-UG---------UGGG- -5'
17059 5' -56.6 NC_004333.2 + 22066 0.69 0.40881
Target:  5'- -gCACGGCgcguaGCGCCAggaaagaGGCGCCCa -3'
miRNA:   3'- agGUGCCGaugg-CGUGGUa------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 9469 0.69 0.40881
Target:  5'- -gCGCGGgUGCCGCACCGc--CGCCg -3'
miRNA:   3'- agGUGCCgAUGGCGUGGUacuGUGGg -5'
17059 5' -56.6 NC_004333.2 + 45126 0.69 0.40881
Target:  5'- -gCGCGGCgAUCGCGCCuaccUGucguCGCCCg -3'
miRNA:   3'- agGUGCCGaUGGCGUGGu---ACu---GUGGG- -5'
17059 5' -56.6 NC_004333.2 + 6449 0.69 0.40881
Target:  5'- cCCGCGccgaucuccucGUUgAUCGCGCCGUGcCGCCCg -3'
miRNA:   3'- aGGUGC-----------CGA-UGGCGUGGUACuGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 34274 0.69 0.40881
Target:  5'- gCCACGGCagccGCCGCGcagcCCGUGcCGgCCg -3'
miRNA:   3'- aGGUGCCGa---UGGCGU----GGUACuGUgGG- -5'
17059 5' -56.6 NC_004333.2 + 8868 0.69 0.427606
Target:  5'- aUCGCGGCUGCgGCGCgGUuagccgcGCACCUu -3'
miRNA:   3'- aGGUGCCGAUGgCGUGgUAc------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 24921 0.69 0.437195
Target:  5'- gUCACGGUUGUCGUACCcUGaccggagaagcGCACCCg -3'
miRNA:   3'- aGGUGCCGAUGGCGUGGuAC-----------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38393 0.69 0.437195
Target:  5'- aUgACGGCUAuCCGUggcaACCAugUGGCGCUCg -3'
miRNA:   3'- aGgUGCCGAU-GGCG----UGGU--ACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 43204 0.69 0.437195
Target:  5'- -aUAUGcGCUGCCGCaaggcucgGCCAUuGCGCCCu -3'
miRNA:   3'- agGUGC-CGAUGGCG--------UGGUAcUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 27083 0.69 0.456734
Target:  5'- aCCgACGGCguucgugaaGCCGCACgucgcauaguUGGCGCCCa -3'
miRNA:   3'- aGG-UGCCGa--------UGGCGUGgu--------ACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 35865 0.69 0.456734
Target:  5'- cCCGCgcgaGGCUGgCGCGCag-GACGCCg -3'
miRNA:   3'- aGGUG----CCGAUgGCGUGguaCUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 22613 0.68 0.465678
Target:  5'- gUCCGuCGGgUucgUCGCGCCugugcgcuggaugAUGACGCCCa -3'
miRNA:   3'- -AGGU-GCCgAu--GGCGUGG-------------UACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 28240 0.68 0.466678
Target:  5'- aCgGCGGCUcGCCGC-CCGgcGCGCUCg -3'
miRNA:   3'- aGgUGCCGA-UGGCGuGGUacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 41575 0.68 0.466678
Target:  5'- aCUGCGGCgcuggGCggCGCGCCGUGGCGgCg -3'
miRNA:   3'- aGGUGCCGa----UG--GCGUGGUACUGUgGg -5'
17059 5' -56.6 NC_004333.2 + 45392 0.68 0.466678
Target:  5'- gCCAgguCGGCaagGCCGCagACC-UGGCACUCg -3'
miRNA:   3'- aGGU---GCCGa--UGGCG--UGGuACUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.