miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 33987 0.66 0.593093
Target:  5'- gUCAU-GCUGCCGCAUCccGACgagcgACCCg -3'
miRNA:   3'- aGGUGcCGAUGGCGUGGuaCUG-----UGGG- -5'
17059 5' -56.6 NC_004333.2 + 29985 0.66 0.593093
Target:  5'- gCCAcCGGC-GCCgagcgcgaGCACCAUGcgGCGCCg -3'
miRNA:   3'- aGGU-GCCGaUGG--------CGUGGUAC--UGUGGg -5'
17059 5' -56.6 NC_004333.2 + 27427 0.66 0.593093
Target:  5'- -gCGCGGCgacgGCUGUcgACCA-GGCGCCa -3'
miRNA:   3'- agGUGCCGa---UGGCG--UGGUaCUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 41829 0.66 0.593093
Target:  5'- aCgACGGCgcccgGCCGCGagCGgucgGGCAUCCg -3'
miRNA:   3'- aGgUGCCGa----UGGCGUg-GUa---CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 28601 0.66 0.593093
Target:  5'- aUCGCGcGCgauuccccuugUGCCGCGCCGaccgugcgaccGGCGCCCa -3'
miRNA:   3'- aGGUGC-CG-----------AUGGCGUGGUa----------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 1271 0.66 0.593093
Target:  5'- cUCGCGGC-GCUGCAgCAUGaacagcagGCGCUCg -3'
miRNA:   3'- aGGUGCCGaUGGCGUgGUAC--------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 47470 0.66 0.593093
Target:  5'- gCCACGGCgcucgcgggcgGCgGCACgAUcGCGCUCa -3'
miRNA:   3'- aGGUGCCGa----------UGgCGUGgUAcUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 21017 0.66 0.593093
Target:  5'- -nCAUGGCUGaucgCGCGCC--GACACCa -3'
miRNA:   3'- agGUGCCGAUg---GCGUGGuaCUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 3989 0.66 0.582198
Target:  5'- gUUGCGGCguuuaGCUGCugCGUGAC-CUCg -3'
miRNA:   3'- aGGUGCCGa----UGGCGugGUACUGuGGG- -5'
17059 5' -56.6 NC_004333.2 + 48113 0.66 0.582198
Target:  5'- -gCGCGcGC-ACCGCGCCGgcaugGugACCg -3'
miRNA:   3'- agGUGC-CGaUGGCGUGGUa----CugUGGg -5'
17059 5' -56.6 NC_004333.2 + 27529 0.66 0.582198
Target:  5'- gCCACuGGCgca-GCGCCGUugcGACGCUCg -3'
miRNA:   3'- aGGUG-CCGauggCGUGGUA---CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 20443 0.67 0.571344
Target:  5'- uUCgGCGGCgcgaaGCCuGCGCCggucGUGACGCagCCg -3'
miRNA:   3'- -AGgUGCCGa----UGG-CGUGG----UACUGUG--GG- -5'
17059 5' -56.6 NC_004333.2 + 19197 0.67 0.571344
Target:  5'- aCC-CGGCgGCCGCGCaacUGAuCGCCg -3'
miRNA:   3'- aGGuGCCGaUGGCGUGgu-ACU-GUGGg -5'
17059 5' -56.6 NC_004333.2 + 15461 0.67 0.571344
Target:  5'- cUCGcCGGCUAUCGCuGCCGUGuuaaACUCg -3'
miRNA:   3'- aGGU-GCCGAUGGCG-UGGUACug--UGGG- -5'
17059 5' -56.6 NC_004333.2 + 38708 0.67 0.571344
Target:  5'- cUCgGCGGCggUGCgGCACCc--GCGCCUg -3'
miRNA:   3'- -AGgUGCCG--AUGgCGUGGuacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 36443 0.67 0.571344
Target:  5'- gCCGguCGGCUGCCGgACaucgcgcagGACGCCa -3'
miRNA:   3'- aGGU--GCCGAUGGCgUGgua------CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 2787 0.67 0.571344
Target:  5'- gUCUGCGGCcuUGCCG-ACC-UGGCGCUg -3'
miRNA:   3'- -AGGUGCCG--AUGGCgUGGuACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 40099 0.67 0.560539
Target:  5'- aUCCauGCGGCcaagGCgGCAUgAUGGCACgCu -3'
miRNA:   3'- -AGG--UGCCGa---UGgCGUGgUACUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 38323 0.67 0.560539
Target:  5'- uUCCuGCGGUUACCGCuacgugcCCGUcauGCGCUCa -3'
miRNA:   3'- -AGG-UGCCGAUGGCGu------GGUAc--UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 47476 0.67 0.560539
Target:  5'- cCgGCGGCgacUGCCGCGCUgaacgaGGCGCCg -3'
miRNA:   3'- aGgUGCCG---AUGGCGUGGua----CUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.