miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 715 0.67 0.559462
Target:  5'- cCCGCGaGC-GCCGUggcgagguugauuGCCGUuGCGCCCu -3'
miRNA:   3'- aGGUGC-CGaUGGCG-------------UGGUAcUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 17557 0.67 0.549791
Target:  5'- gCCGC-GCUGCUGCACgAccUGGCGUCCg -3'
miRNA:   3'- aGGUGcCGAUGGCGUGgU--ACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 30289 0.67 0.549791
Target:  5'- uUCgACGGCgagcugGCCGCcgucgcGCCugcGACACCa -3'
miRNA:   3'- -AGgUGCCGa-----UGGCG------UGGua-CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 32747 0.67 0.549791
Target:  5'- gUCACGcgcaggucGCUGCCGCcgGCCAUaagcgcGGCACCUu -3'
miRNA:   3'- aGGUGC--------CGAUGGCG--UGGUA------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 20987 0.67 0.549791
Target:  5'- -gCACGGuCUGCCGCcacACCucgggGGCACgCa -3'
miRNA:   3'- agGUGCC-GAUGGCG---UGGua---CUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 45194 0.67 0.549791
Target:  5'- --aGCGGCagcuguuCCGCGCCAcGAaGCCCg -3'
miRNA:   3'- aggUGCCGau-----GGCGUGGUaCUgUGGG- -5'
17059 5' -56.6 NC_004333.2 + 6520 0.67 0.539108
Target:  5'- cUCCuugcCGGCguacgGCCGCAgCCc--GCGCCCg -3'
miRNA:   3'- -AGGu---GCCGa----UGGCGU-GGuacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 18169 0.67 0.539108
Target:  5'- aUCCcgacgaGCGGC-GCCGCAUgGUGcucGCGCUCg -3'
miRNA:   3'- -AGG------UGCCGaUGGCGUGgUAC---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 19950 0.67 0.528497
Target:  5'- gUCACGGUcACgugaCGCGCCcgGACGCgCa -3'
miRNA:   3'- aGGUGCCGaUG----GCGUGGuaCUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 19213 0.68 0.517963
Target:  5'- cUCGCGGCguuCCGCAC---GGCGCUCg -3'
miRNA:   3'- aGGUGCCGau-GGCGUGguaCUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 2955 0.68 0.507514
Target:  5'- cCUGCaGCUG-CGCGagCGUGACGCCCg -3'
miRNA:   3'- aGGUGcCGAUgGCGUg-GUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 9627 0.68 0.507514
Target:  5'- -gCAcCGGCUGCCggcggcGCGCCu--GCGCCCg -3'
miRNA:   3'- agGU-GCCGAUGG------CGUGGuacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 46892 0.68 0.497156
Target:  5'- aUCGCGuaacGCaACCGCGCCAggcGGCGCgCCa -3'
miRNA:   3'- aGGUGC----CGaUGGCGUGGUa--CUGUG-GG- -5'
17059 5' -56.6 NC_004333.2 + 27174 0.68 0.497156
Target:  5'- cCCgugACGGCUGCCacGCGCUcgaaacGCACCCa -3'
miRNA:   3'- aGG---UGCCGAUGG--CGUGGuac---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 54 0.68 0.497156
Target:  5'- uUCgACGGUcaccaUGCCgGCGCgGUGcgcGCGCCCg -3'
miRNA:   3'- -AGgUGCCG-----AUGG-CGUGgUAC---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 24776 0.68 0.486894
Target:  5'- gCCG-GGCUACCaGUACggCGUGAcCGCCCu -3'
miRNA:   3'- aGGUgCCGAUGG-CGUG--GUACU-GUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38578 0.68 0.486894
Target:  5'- -aC-CGGCcgaUGCCGCGCCGgcUGGCGCUg -3'
miRNA:   3'- agGuGCCG---AUGGCGUGGU--ACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 25427 0.68 0.486894
Target:  5'- cCgGCGGCgGCCGUcacgccgggcguGCCGguuacgacGACACCCg -3'
miRNA:   3'- aGgUGCCGaUGGCG------------UGGUa-------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 39631 0.68 0.486894
Target:  5'- aUCCuaGCGGCcgACUGCugCcgGACGCg- -3'
miRNA:   3'- -AGG--UGCCGa-UGGCGugGuaCUGUGgg -5'
17059 5' -56.6 NC_004333.2 + 24280 0.68 0.484853
Target:  5'- gCCGuuCGGCUuCCGCACgAUGAacggcggcacgaACCCg -3'
miRNA:   3'- aGGU--GCCGAuGGCGUGgUACUg-----------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.