Results 61 - 80 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17059 | 5' | -56.6 | NC_004333.2 | + | 18842 | 0.68 | 0.480784 |
Target: 5'- -gCGCGGCaguacgcaguUGCCGUgcgcaacgcauugccGCCggGGCGCCCa -3' miRNA: 3'- agGUGCCG----------AUGGCG---------------UGGuaCUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 3213 | 0.68 | 0.476732 |
Target: 5'- gCC-CGGCgcGCCGCccGCCccgAUGACGCCg -3' miRNA: 3'- aGGuGCCGa-UGGCG--UGG---UACUGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 20760 | 0.68 | 0.476732 |
Target: 5'- -aCGCGGCUG-CGCGCCugaacgucGACACgCCu -3' miRNA: 3'- agGUGCCGAUgGCGUGGua------CUGUG-GG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 5870 | 0.68 | 0.473705 |
Target: 5'- gCCACGcccguggugccGCUGCCcaugcaguuguccaGCACCGUGuCGCCUu -3' miRNA: 3'- aGGUGC-----------CGAUGG--------------CGUGGUACuGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 41575 | 0.68 | 0.466678 |
Target: 5'- aCUGCGGCgcuggGCggCGCGCCGUGGCGgCg -3' miRNA: 3'- aGGUGCCGa----UG--GCGUGGUACUGUgGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 28240 | 0.68 | 0.466678 |
Target: 5'- aCgGCGGCUcGCCGC-CCGgcGCGCUCg -3' miRNA: 3'- aGgUGCCGA-UGGCGuGGUacUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 45392 | 0.68 | 0.466678 |
Target: 5'- gCCAgguCGGCaagGCCGCagACC-UGGCACUCg -3' miRNA: 3'- aGGU---GCCGa--UGGCG--UGGuACUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 22613 | 0.68 | 0.465678 |
Target: 5'- gUCCGuCGGgUucgUCGCGCCugugcgcuggaugAUGACGCCCa -3' miRNA: 3'- -AGGU-GCCgAu--GGCGUGG-------------UACUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 35865 | 0.69 | 0.456734 |
Target: 5'- cCCGCgcgaGGCUGgCGCGCag-GACGCCg -3' miRNA: 3'- aGGUG----CCGAUgGCGUGguaCUGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 27083 | 0.69 | 0.456734 |
Target: 5'- aCCgACGGCguucgugaaGCCGCACgucgcauaguUGGCGCCCa -3' miRNA: 3'- aGG-UGCCGa--------UGGCGUGgu--------ACUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 38393 | 0.69 | 0.437195 |
Target: 5'- aUgACGGCUAuCCGUggcaACCAugUGGCGCUCg -3' miRNA: 3'- aGgUGCCGAU-GGCG----UGGU--ACUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 43204 | 0.69 | 0.437195 |
Target: 5'- -aUAUGcGCUGCCGCaaggcucgGCCAUuGCGCCCu -3' miRNA: 3'- agGUGC-CGAUGGCG--------UGGUAcUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 24921 | 0.69 | 0.437195 |
Target: 5'- gUCACGGUUGUCGUACCcUGaccggagaagcGCACCCg -3' miRNA: 3'- aGGUGCCGAUGGCGUGGuAC-----------UGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 8868 | 0.69 | 0.427606 |
Target: 5'- aUCGCGGCUGCgGCGCgGUuagccgcGCACCUu -3' miRNA: 3'- aGGUGCCGAUGgCGUGgUAc------UGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 45126 | 0.69 | 0.40881 |
Target: 5'- -gCGCGGCgAUCGCGCCuaccUGucguCGCCCg -3' miRNA: 3'- agGUGCCGaUGGCGUGGu---ACu---GUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 9469 | 0.69 | 0.40881 |
Target: 5'- -gCGCGGgUGCCGCACCGc--CGCCg -3' miRNA: 3'- agGUGCCgAUGGCGUGGUacuGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 22066 | 0.69 | 0.40881 |
Target: 5'- -gCACGGCgcguaGCGCCAggaaagaGGCGCCCa -3' miRNA: 3'- agGUGCCGaugg-CGUGGUa------CUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 6449 | 0.69 | 0.40881 |
Target: 5'- cCCGCGccgaucuccucGUUgAUCGCGCCGUGcCGCCCg -3' miRNA: 3'- aGGUGC-----------CGA-UGGCGUGGUACuGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 34274 | 0.69 | 0.40881 |
Target: 5'- gCCACGGCagccGCCGCGcagcCCGUGcCGgCCg -3' miRNA: 3'- aGGUGCCGa---UGGCGU----GGUACuGUgGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 45002 | 0.7 | 0.399608 |
Target: 5'- aCCACGGCgcgcuguccgGCCGCucgaccGCgCGUGGCGCUg -3' miRNA: 3'- aGGUGCCGa---------UGGCG------UG-GUACUGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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