miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 54 0.68 0.497156
Target:  5'- uUCgACGGUcaccaUGCCgGCGCgGUGcgcGCGCCCg -3'
miRNA:   3'- -AGgUGCCG-----AUGG-CGUGgUAC---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 715 0.67 0.559462
Target:  5'- cCCGCGaGC-GCCGUggcgagguugauuGCCGUuGCGCCCu -3'
miRNA:   3'- aGGUGC-CGaUGGCG-------------UGGUAcUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 1271 0.66 0.593093
Target:  5'- cUCGCGGC-GCUGCAgCAUGaacagcagGCGCUCg -3'
miRNA:   3'- aGGUGCCGaUGGCGUgGUAC--------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 2604 0.66 0.604022
Target:  5'- aCCG-GGCUGgucgaGCGCCAUGAgCACCg -3'
miRNA:   3'- aGGUgCCGAUgg---CGUGGUACU-GUGGg -5'
17059 5' -56.6 NC_004333.2 + 2787 0.67 0.571344
Target:  5'- gUCUGCGGCcuUGCCG-ACC-UGGCGCUg -3'
miRNA:   3'- -AGGUGCCG--AUGGCgUGGuACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 2955 0.68 0.507514
Target:  5'- cCUGCaGCUG-CGCGagCGUGACGCCCg -3'
miRNA:   3'- aGGUGcCGAUgGCGUg-GUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 3213 0.68 0.476732
Target:  5'- gCC-CGGCgcGCCGCccGCCccgAUGACGCCg -3'
miRNA:   3'- aGGuGCCGa-UGGCG--UGG---UACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 3595 0.66 0.625941
Target:  5'- aUCGCGGCgAUCGUAuucgcCCAgucgGGCGCCUg -3'
miRNA:   3'- aGGUGCCGaUGGCGU-----GGUa---CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 3989 0.66 0.582198
Target:  5'- gUUGCGGCguuuaGCUGCugCGUGAC-CUCg -3'
miRNA:   3'- aGGUGCCGa----UGGCGugGUACUGuGGG- -5'
17059 5' -56.6 NC_004333.2 + 4208 0.66 0.614974
Target:  5'- gCCugGauuuGCaGCUGCGCguUGACGCUCg -3'
miRNA:   3'- aGGugC----CGaUGGCGUGguACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 5870 0.68 0.473705
Target:  5'- gCCACGcccguggugccGCUGCCcaugcaguuguccaGCACCGUGuCGCCUu -3'
miRNA:   3'- aGGUGC-----------CGAUGG--------------CGUGGUACuGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 6048 0.71 0.330932
Target:  5'- gCCAUGGCUuCCGCGCUuUGagaacaucGCAUCCg -3'
miRNA:   3'- aGGUGCCGAuGGCGUGGuAC--------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 6449 0.69 0.40881
Target:  5'- cCCGCGccgaucuccucGUUgAUCGCGCCGUGcCGCCCg -3'
miRNA:   3'- aGGUGC-----------CGA-UGGCGUGGUACuGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 6520 0.67 0.539108
Target:  5'- cUCCuugcCGGCguacgGCCGCAgCCc--GCGCCCg -3'
miRNA:   3'- -AGGu---GCCGa----UGGCGU-GGuacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 6599 0.71 0.315178
Target:  5'- gCCACGGCgcGCCGC-CCA--GCGCCg -3'
miRNA:   3'- aGGUGCCGa-UGGCGuGGUacUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 8138 0.73 0.257866
Target:  5'- gUCUugcgaGGCguCCGCGCCGUGGCGCCg -3'
miRNA:   3'- -AGGug---CCGauGGCGUGGUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 8693 0.75 0.193304
Target:  5'- -gCACGGCgaacgUGCCG-ACCGUGACGCCg -3'
miRNA:   3'- agGUGCCG-----AUGGCgUGGUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 8868 0.69 0.427606
Target:  5'- aUCGCGGCUGCgGCGCgGUuagccgcGCACCUu -3'
miRNA:   3'- aGGUGCCGAUGgCGUGgUAc------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 9469 0.69 0.40881
Target:  5'- -gCGCGGgUGCCGCACCGc--CGCCg -3'
miRNA:   3'- agGUGCCgAUGGCGUGGUacuGUGGg -5'
17059 5' -56.6 NC_004333.2 + 9627 0.68 0.507514
Target:  5'- -gCAcCGGCUGCCggcggcGCGCCu--GCGCCCg -3'
miRNA:   3'- agGU-GCCGAUGG------CGUGGuacUGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.