miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 11290 0.66 0.614974
Target:  5'- gCCGCGcGCUguugaACUGCGCCGU--CGCCUu -3'
miRNA:   3'- aGGUGC-CGA-----UGGCGUGGUAcuGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 12221 0.66 0.614974
Target:  5'- cUCgACGGCUugaaugcgcagAUCGCGCuCAUGACgACUg -3'
miRNA:   3'- -AGgUGCCGA-----------UGGCGUG-GUACUG-UGGg -5'
17059 5' -56.6 NC_004333.2 + 13911 0.71 0.339023
Target:  5'- gCgGCGGCUGCCGUggcgAUCGUGgccGCugCCg -3'
miRNA:   3'- aGgUGCCGAUGGCG----UGGUAC---UGugGG- -5'
17059 5' -56.6 NC_004333.2 + 14286 0.73 0.257866
Target:  5'- -aCACGGCaACCGCACCGcUGuCGCUg -3'
miRNA:   3'- agGUGCCGaUGGCGUGGU-ACuGUGGg -5'
17059 5' -56.6 NC_004333.2 + 14724 0.66 0.614974
Target:  5'- gCC-CGGCgcGCCGCuGCCAauGCugCCg -3'
miRNA:   3'- aGGuGCCGa-UGGCG-UGGUacUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 14843 0.73 0.238678
Target:  5'- aCCACGGCgUGCCG-AUCAgaaUGACGCCg -3'
miRNA:   3'- aGGUGCCG-AUGGCgUGGU---ACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 15461 0.67 0.571344
Target:  5'- cUCGcCGGCUAUCGCuGCCGUGuuaaACUCg -3'
miRNA:   3'- aGGU-GCCGAUGGCG-UGGUACug--UGGG- -5'
17059 5' -56.6 NC_004333.2 + 15718 0.66 0.625941
Target:  5'- gCUGCGGCUcgucGCgGCGCUgaagGGCGCCg -3'
miRNA:   3'- aGGUGCCGA----UGgCGUGGua--CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 16889 0.73 0.251333
Target:  5'- -gCACGGCcgACUGCcugaucugguGCCcgGGCGCCCg -3'
miRNA:   3'- agGUGCCGa-UGGCG----------UGGuaCUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 17061 0.66 0.614974
Target:  5'- cUCGCGGUguuccaGCCGCGCCGgaACAUCg -3'
miRNA:   3'- aGGUGCCGa-----UGGCGUGGUacUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 17557 0.67 0.549791
Target:  5'- gCCGC-GCUGCUGCACgAccUGGCGUCCg -3'
miRNA:   3'- aGGUGcCGAUGGCGUGgU--ACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 18109 0.66 0.604022
Target:  5'- gCUACGGCaucgacCCGCGCUuUGGCACg- -3'
miRNA:   3'- aGGUGCCGau----GGCGUGGuACUGUGgg -5'
17059 5' -56.6 NC_004333.2 + 18169 0.67 0.539108
Target:  5'- aUCCcgacgaGCGGC-GCCGCAUgGUGcucGCGCUCg -3'
miRNA:   3'- -AGG------UGCCGaUGGCGUGgUAC---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 18842 0.68 0.480784
Target:  5'- -gCGCGGCaguacgcaguUGCCGUgcgcaacgcauugccGCCggGGCGCCCa -3'
miRNA:   3'- agGUGCCG----------AUGGCG---------------UGGuaCUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 19197 0.67 0.571344
Target:  5'- aCC-CGGCgGCCGCGCaacUGAuCGCCg -3'
miRNA:   3'- aGGuGCCGaUGGCGUGgu-ACU-GUGGg -5'
17059 5' -56.6 NC_004333.2 + 19213 0.68 0.517963
Target:  5'- cUCGCGGCguuCCGCAC---GGCGCUCg -3'
miRNA:   3'- aGGUGCCGau-GGCGUGguaCUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 19787 0.7 0.371937
Target:  5'- gCgGCGGUUAuugguucCCGCACCgccGUGGCugCCu -3'
miRNA:   3'- aGgUGCCGAU-------GGCGUGG---UACUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 19950 0.67 0.528497
Target:  5'- gUCACGGUcACgugaCGCGCCcgGACGCgCa -3'
miRNA:   3'- aGGUGCCGaUG----GCGUGGuaCUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 20443 0.67 0.571344
Target:  5'- uUCgGCGGCgcgaaGCCuGCGCCggucGUGACGCagCCg -3'
miRNA:   3'- -AGgUGCCGa----UGG-CGUGG----UACUGUG--GG- -5'
17059 5' -56.6 NC_004333.2 + 20488 0.76 0.168934
Target:  5'- gUCCcgGCGGCUGCCGCGCaaccGCugCCg -3'
miRNA:   3'- -AGG--UGCCGAUGGCGUGguacUGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.