miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 20760 0.68 0.476732
Target:  5'- -aCGCGGCUG-CGCGCCugaacgucGACACgCCu -3'
miRNA:   3'- agGUGCCGAUgGCGUGGua------CUGUG-GG- -5'
17059 5' -56.6 NC_004333.2 + 20818 1.13 0.000352
Target:  5'- uUCCACGGCUACCGCACCAUGACACCCa -3'
miRNA:   3'- -AGGUGCCGAUGGCGUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 20987 0.67 0.549791
Target:  5'- -gCACGGuCUGCCGCcacACCucgggGGCACgCa -3'
miRNA:   3'- agGUGCC-GAUGGCG---UGGua---CUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 21017 0.66 0.593093
Target:  5'- -nCAUGGCUGaucgCGCGCC--GACACCa -3'
miRNA:   3'- agGUGCCGAUg---GCGUGGuaCUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 21635 0.66 0.625941
Target:  5'- -gCGCgGGCUccgugcaguucGCCGCACCugucGGCGCgCCg -3'
miRNA:   3'- agGUG-CCGA-----------UGGCGUGGua--CUGUG-GG- -5'
17059 5' -56.6 NC_004333.2 + 21737 0.74 0.220119
Target:  5'- gCCAgguCGGCacGCCGCacaauugACCAUGACGCCUa -3'
miRNA:   3'- aGGU---GCCGa-UGGCG-------UGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 21778 0.66 0.604022
Target:  5'- gCCAuuCGGCgaagUGCCGCGCgaGUGGCAgCUg -3'
miRNA:   3'- aGGU--GCCG----AUGGCGUGg-UACUGUgGG- -5'
17059 5' -56.6 NC_004333.2 + 22066 0.69 0.40881
Target:  5'- -gCACGGCgcguaGCGCCAggaaagaGGCGCCCa -3'
miRNA:   3'- agGUGCCGaugg-CGUGGUa------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 22114 0.71 0.322983
Target:  5'- gCCGCcGCUGCgGCGCCAcUGGCAaaUCCg -3'
miRNA:   3'- aGGUGcCGAUGgCGUGGU-ACUGU--GGG- -5'
17059 5' -56.6 NC_004333.2 + 22613 0.68 0.465678
Target:  5'- gUCCGuCGGgUucgUCGCGCCugugcgcuggaugAUGACGCCCa -3'
miRNA:   3'- -AGGU-GCCgAu--GGCGUGG-------------UACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 24251 0.74 0.214966
Target:  5'- uUCCACGGUgUGCCGC-CCGUcGAaaagaACCCg -3'
miRNA:   3'- -AGGUGCCG-AUGGCGuGGUA-CUg----UGGG- -5'
17059 5' -56.6 NC_004333.2 + 24280 0.68 0.484853
Target:  5'- gCCGuuCGGCUuCCGCACgAUGAacggcggcacgaACCCg -3'
miRNA:   3'- aGGU--GCCGAuGGCGUGgUACUg-----------UGGG- -5'
17059 5' -56.6 NC_004333.2 + 24776 0.68 0.486894
Target:  5'- gCCG-GGCUACCaGUACggCGUGAcCGCCCu -3'
miRNA:   3'- aGGUgCCGAUGG-CGUG--GUACU-GUGGG- -5'
17059 5' -56.6 NC_004333.2 + 24921 0.69 0.437195
Target:  5'- gUCACGGUUGUCGUACCcUGaccggagaagcGCACCCg -3'
miRNA:   3'- aGGUGCCGAUGGCGUGGuAC-----------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 25427 0.68 0.486894
Target:  5'- cCgGCGGCgGCCGUcacgccgggcguGCCGguuacgacGACACCCg -3'
miRNA:   3'- aGgUGCCGaUGGCG------------UGGUa-------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 26113 0.7 0.399608
Target:  5'- uUCCugGcGCUA-CGCGCCGUGcACgaucuguccGCCCg -3'
miRNA:   3'- -AGGugC-CGAUgGCGUGGUAC-UG---------UGGG- -5'
17059 5' -56.6 NC_004333.2 + 27083 0.69 0.456734
Target:  5'- aCCgACGGCguucgugaaGCCGCACgucgcauaguUGGCGCCCa -3'
miRNA:   3'- aGG-UGCCGa--------UGGCGUGgu--------ACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 27174 0.68 0.497156
Target:  5'- cCCgugACGGCUGCCacGCGCUcgaaacGCACCCa -3'
miRNA:   3'- aGG---UGCCGAUGG--CGUGGuac---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 27427 0.66 0.593093
Target:  5'- -gCGCGGCgacgGCUGUcgACCA-GGCGCCa -3'
miRNA:   3'- agGUGCCGa---UGGCG--UGGUaCUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 27529 0.66 0.582198
Target:  5'- gCCACuGGCgca-GCGCCGUugcGACGCUCg -3'
miRNA:   3'- aGGUG-CCGauggCGUGGUA---CUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.