miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 48113 0.66 0.582198
Target:  5'- -gCGCGcGC-ACCGCGCCGgcaugGugACCg -3'
miRNA:   3'- agGUGC-CGaUGGCGUGGUa----CugUGGg -5'
17059 5' -56.6 NC_004333.2 + 47476 0.67 0.560539
Target:  5'- cCgGCGGCgacUGCCGCGCUgaacgaGGCGCCg -3'
miRNA:   3'- aGgUGCCG---AUGGCGUGGua----CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 47470 0.66 0.593093
Target:  5'- gCCACGGCgcucgcgggcgGCgGCACgAUcGCGCUCa -3'
miRNA:   3'- aGGUGCCGa----------UGgCGUGgUAcUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 46892 0.68 0.497156
Target:  5'- aUCGCGuaacGCaACCGCGCCAggcGGCGCgCCa -3'
miRNA:   3'- aGGUGC----CGaUGGCGUGGUa--CUGUG-GG- -5'
17059 5' -56.6 NC_004333.2 + 45583 0.66 0.613878
Target:  5'- -aUugGGCgaccuucacgACCGCcuggacgGCCGUGAUugCCg -3'
miRNA:   3'- agGugCCGa---------UGGCG-------UGGUACUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 45392 0.68 0.466678
Target:  5'- gCCAgguCGGCaagGCCGCagACC-UGGCACUCg -3'
miRNA:   3'- aGGU---GCCGa--UGGCG--UGGuACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 45194 0.67 0.549791
Target:  5'- --aGCGGCagcuguuCCGCGCCAcGAaGCCCg -3'
miRNA:   3'- aggUGCCGau-----GGCGUGGUaCUgUGGG- -5'
17059 5' -56.6 NC_004333.2 + 45126 0.69 0.40881
Target:  5'- -gCGCGGCgAUCGCGCCuaccUGucguCGCCCg -3'
miRNA:   3'- agGUGCCGaUGGCGUGGu---ACu---GUGGG- -5'
17059 5' -56.6 NC_004333.2 + 45064 0.66 0.625941
Target:  5'- aCCGC-GCgGCCGCGCCcgGGCAa-- -3'
miRNA:   3'- aGGUGcCGaUGGCGUGGuaCUGUggg -5'
17059 5' -56.6 NC_004333.2 + 45002 0.7 0.399608
Target:  5'- aCCACGGCgcgcuguccgGCCGCucgaccGCgCGUGGCGCUg -3'
miRNA:   3'- aGGUGCCGa---------UGGCG------UG-GUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 44278 0.74 0.232552
Target:  5'- gCCugGcGCUACCacgaCACCAUGACcaauCCCg -3'
miRNA:   3'- aGGugC-CGAUGGc---GUGGUACUGu---GGG- -5'
17059 5' -56.6 NC_004333.2 + 43204 0.69 0.437195
Target:  5'- -aUAUGcGCUGCCGCaaggcucgGCCAUuGCGCCCu -3'
miRNA:   3'- agGUGC-CGAUGGCG--------UGGUAcUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 42407 0.66 0.636914
Target:  5'- -gCGagaGGCUAUCG-ACCGUGACAUUCc -3'
miRNA:   3'- agGUg--CCGAUGGCgUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 41829 0.66 0.593093
Target:  5'- aCgACGGCgcccgGCCGCGagCGgucgGGCAUCCg -3'
miRNA:   3'- aGgUGCCGa----UGGCGUg-GUa---CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 41575 0.68 0.466678
Target:  5'- aCUGCGGCgcuggGCggCGCGCCGUGGCGgCg -3'
miRNA:   3'- aGGUGCCGa----UG--GCGUGGUACUGUgGg -5'
17059 5' -56.6 NC_004333.2 + 41568 0.66 0.625941
Target:  5'- -aC-CGGCUucaaCGCGCCAuucguUGACugCCu -3'
miRNA:   3'- agGuGCCGAug--GCGUGGU-----ACUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 41420 0.7 0.364151
Target:  5'- aCCucgaGGCgcgcgACCgggGCGCCGUGGCGCUCg -3'
miRNA:   3'- aGGug--CCGa----UGG---CGUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 40099 0.67 0.560539
Target:  5'- aUCCauGCGGCcaagGCgGCAUgAUGGCACgCu -3'
miRNA:   3'- -AGG--UGCCGa---UGgCGUGgUACUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 39631 0.68 0.486894
Target:  5'- aUCCuaGCGGCcgACUGCugCcgGACGCg- -3'
miRNA:   3'- -AGG--UGCCGa-UGGCGugGuaCUGUGgg -5'
17059 5' -56.6 NC_004333.2 + 39306 0.73 0.244938
Target:  5'- -gCGCGGCUaACCGCGCCGcagccgcGAUACCUu -3'
miRNA:   3'- agGUGCCGA-UGGCGUGGUa------CUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.