miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 38916 0.74 0.220698
Target:  5'- aUCCGCagaaGGCUauGCCGCACgCGgcgaGGCGCCCc -3'
miRNA:   3'- -AGGUG----CCGA--UGGCGUG-GUa---CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38708 0.67 0.571344
Target:  5'- cUCgGCGGCggUGCgGCACCc--GCGCCUg -3'
miRNA:   3'- -AGgUGCCG--AUGgCGUGGuacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38612 0.66 0.625941
Target:  5'- gCCG-GGCgcGCCGCugcCCGUGGUGCCCg -3'
miRNA:   3'- aGGUgCCGa-UGGCGu--GGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38578 0.68 0.486894
Target:  5'- -aC-CGGCcgaUGCCGCGCCGgcUGGCGCUg -3'
miRNA:   3'- agGuGCCG---AUGGCGUGGU--ACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 38393 0.69 0.437195
Target:  5'- aUgACGGCUAuCCGUggcaACCAugUGGCGCUCg -3'
miRNA:   3'- aGgUGCCGAU-GGCG----UGGU--ACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38323 0.67 0.560539
Target:  5'- uUCCuGCGGUUACCGCuacgugcCCGUcauGCGCUCa -3'
miRNA:   3'- -AGG-UGCCGAUGGCGu------GGUAc--UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 36443 0.67 0.571344
Target:  5'- gCCGguCGGCUGCCGgACaucgcgcagGACGCCa -3'
miRNA:   3'- aGGU--GCCGAUGGCgUGgua------CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 36169 0.71 0.347257
Target:  5'- aUCCggAUGaGCUGCCGCAuCCGUuGCACCg -3'
miRNA:   3'- -AGG--UGC-CGAUGGCGU-GGUAcUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 35865 0.69 0.456734
Target:  5'- cCCGCgcgaGGCUGgCGCGCag-GACGCCg -3'
miRNA:   3'- aGGUG----CCGAUgGCGUGguaCUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 34748 0.66 0.625941
Target:  5'- aUCCAUgaucaGGCguucgGCCGCGC----GCACCCg -3'
miRNA:   3'- -AGGUG-----CCGa----UGGCGUGguacUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 34274 0.69 0.40881
Target:  5'- gCCACGGCagccGCCGCGcagcCCGUGcCGgCCg -3'
miRNA:   3'- aGGUGCCGa---UGGCGU----GGUACuGUgGG- -5'
17059 5' -56.6 NC_004333.2 + 34240 0.66 0.614974
Target:  5'- gCCGcCGGU---CGCACU-UGACGCCCa -3'
miRNA:   3'- aGGU-GCCGaugGCGUGGuACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 33987 0.66 0.593093
Target:  5'- gUCAU-GCUGCCGCAUCccGACgagcgACCCg -3'
miRNA:   3'- aGGUGcCGAUGGCGUGGuaCUG-----UGGG- -5'
17059 5' -56.6 NC_004333.2 + 33943 0.74 0.209363
Target:  5'- gUCUACGccagACgGCACCGUGAUGCCCg -3'
miRNA:   3'- -AGGUGCcga-UGgCGUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 32917 0.66 0.638011
Target:  5'- -gCACGGCaaaucgucgcuauuUCGCGCUgcuUGGCACCCu -3'
miRNA:   3'- agGUGCCGau------------GGCGUGGu--ACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 32747 0.67 0.549791
Target:  5'- gUCACGcgcaggucGCUGCCGCcgGCCAUaagcgcGGCACCUu -3'
miRNA:   3'- aGGUGC--------CGAUGGCG--UGGUA------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 31284 0.71 0.355634
Target:  5'- aCCAugcCGGCgagaccgGCCGCACCugcgccGACGCCg -3'
miRNA:   3'- aGGU---GCCGa------UGGCGUGGua----CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 31119 0.75 0.198533
Target:  5'- -gCGCGGCUggaacACCGCGagCAUGACGCCa -3'
miRNA:   3'- agGUGCCGA-----UGGCGUg-GUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 30289 0.67 0.549791
Target:  5'- uUCgACGGCgagcugGCCGCcgucgcGCCugcGACACCa -3'
miRNA:   3'- -AGgUGCCGa-----UGGCG------UGGua-CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 29985 0.66 0.593093
Target:  5'- gCCAcCGGC-GCCgagcgcgaGCACCAUGcgGCGCCg -3'
miRNA:   3'- aGGU-GCCGaUGG--------CGUGGUAC--UGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.