miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 20488 0.76 0.168934
Target:  5'- gUCCcgGCGGCUGCCGCGCaaccGCugCCg -3'
miRNA:   3'- -AGG--UGCCGAUGGCGUGguacUGugGG- -5'
17059 5' -56.6 NC_004333.2 + 45392 0.68 0.466678
Target:  5'- gCCAgguCGGCaagGCCGCagACC-UGGCACUCg -3'
miRNA:   3'- aGGU---GCCGa--UGGCG--UGGuACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 3213 0.68 0.476732
Target:  5'- gCC-CGGCgcGCCGCccGCCccgAUGACGCCg -3'
miRNA:   3'- aGGuGCCGa-UGGCG--UGG---UACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 29509 0.66 0.636914
Target:  5'- uUCCAC-GCUuuaCGCGCUuuGUGACACUUc -3'
miRNA:   3'- -AGGUGcCGAug-GCGUGG--UACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 14843 0.73 0.238678
Target:  5'- aCCACGGCgUGCCG-AUCAgaaUGACGCCg -3'
miRNA:   3'- aGGUGCCG-AUGGCgUGGU---ACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 16889 0.73 0.251333
Target:  5'- -gCACGGCcgACUGCcugaucugguGCCcgGGCGCCCg -3'
miRNA:   3'- agGUGCCGa-UGGCG----------UGGuaCUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 6048 0.71 0.330932
Target:  5'- gCCAUGGCUuCCGCGCUuUGagaacaucGCAUCCg -3'
miRNA:   3'- aGGUGCCGAuGGCGUGGuAC--------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 13911 0.71 0.339023
Target:  5'- gCgGCGGCUGCCGUggcgAUCGUGgccGCugCCg -3'
miRNA:   3'- aGgUGCCGAUGGCG----UGGUAC---UGugGG- -5'
17059 5' -56.6 NC_004333.2 + 22066 0.69 0.40881
Target:  5'- -gCACGGCgcguaGCGCCAggaaagaGGCGCCCa -3'
miRNA:   3'- agGUGCCGaugg-CGUGGUa------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 22613 0.68 0.465678
Target:  5'- gUCCGuCGGgUucgUCGCGCCugugcgcuggaugAUGACGCCCa -3'
miRNA:   3'- -AGGU-GCCgAu--GGCGUGG-------------UACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 45126 0.69 0.40881
Target:  5'- -gCGCGGCgAUCGCGCCuaccUGucguCGCCCg -3'
miRNA:   3'- agGUGCCGaUGGCGUGGu---ACu---GUGGG- -5'
17059 5' -56.6 NC_004333.2 + 45002 0.7 0.399608
Target:  5'- aCCACGGCgcgcuguccgGCCGCucgaccGCgCGUGGCGCUg -3'
miRNA:   3'- aGGUGCCGa---------UGGCG------UG-GUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 8693 0.75 0.193304
Target:  5'- -gCACGGCgaacgUGCCG-ACCGUGACGCCg -3'
miRNA:   3'- agGUGCCG-----AUGGCgUGGUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 8868 0.69 0.427606
Target:  5'- aUCGCGGCUGCgGCGCgGUuagccgcGCACCUu -3'
miRNA:   3'- aGGUGCCGAUGgCGUGgUAc------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 33943 0.74 0.209363
Target:  5'- gUCUACGccagACgGCACCGUGAUGCCCg -3'
miRNA:   3'- -AGGUGCcga-UGgCGUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 31284 0.71 0.355634
Target:  5'- aCCAugcCGGCgagaccgGCCGCACCugcgccGACGCCg -3'
miRNA:   3'- aGGU---GCCGa------UGGCGUGGua----CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 24921 0.69 0.437195
Target:  5'- gUCACGGUUGUCGUACCcUGaccggagaagcGCACCCg -3'
miRNA:   3'- aGGUGCCGAUGGCGUGGuAC-----------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 5870 0.68 0.473705
Target:  5'- gCCACGcccguggugccGCUGCCcaugcaguuguccaGCACCGUGuCGCCUu -3'
miRNA:   3'- aGGUGC-----------CGAUGG--------------CGUGGUACuGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 24251 0.74 0.214966
Target:  5'- uUCCACGGUgUGCCGC-CCGUcGAaaagaACCCg -3'
miRNA:   3'- -AGGUGCCG-AUGGCGuGGUA-CUg----UGGG- -5'
17059 5' -56.6 NC_004333.2 + 6599 0.71 0.315178
Target:  5'- gCCACGGCgcGCCGC-CCA--GCGCCg -3'
miRNA:   3'- aGGUGCCGa-UGGCGuGGUacUGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.