miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 25427 0.68 0.486894
Target:  5'- cCgGCGGCgGCCGUcacgccgggcguGCCGguuacgacGACACCCg -3'
miRNA:   3'- aGgUGCCGaUGGCG------------UGGUa-------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 3213 0.68 0.476732
Target:  5'- gCC-CGGCgcGCCGCccGCCccgAUGACGCCg -3'
miRNA:   3'- aGGuGCCGa-UGGCG--UGG---UACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 45002 0.7 0.399608
Target:  5'- aCCACGGCgcgcuguccgGCCGCucgaccGCgCGUGGCGCUg -3'
miRNA:   3'- aGGUGCCGa---------UGGCG------UG-GUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 24251 0.74 0.214966
Target:  5'- uUCCACGGUgUGCCGC-CCGUcGAaaagaACCCg -3'
miRNA:   3'- -AGGUGCCG-AUGGCGuGGUA-CUg----UGGG- -5'
17059 5' -56.6 NC_004333.2 + 3989 0.66 0.582198
Target:  5'- gUUGCGGCguuuaGCUGCugCGUGAC-CUCg -3'
miRNA:   3'- aGGUGCCGa----UGGCGugGUACUGuGGG- -5'
17059 5' -56.6 NC_004333.2 + 30289 0.67 0.549791
Target:  5'- uUCgACGGCgagcugGCCGCcgucgcGCCugcGACACCa -3'
miRNA:   3'- -AGgUGCCGa-----UGGCG------UGGua-CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 45392 0.68 0.466678
Target:  5'- gCCAgguCGGCaagGCCGCagACC-UGGCACUCg -3'
miRNA:   3'- aGGU---GCCGa--UGGCG--UGGuACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 33943 0.74 0.209363
Target:  5'- gUCUACGccagACgGCACCGUGAUGCCCg -3'
miRNA:   3'- -AGGUGCcga-UGgCGUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 19213 0.68 0.517963
Target:  5'- cUCGCGGCguuCCGCAC---GGCGCUCg -3'
miRNA:   3'- aGGUGCCGau-GGCGUGguaCUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 8693 0.75 0.193304
Target:  5'- -gCACGGCgaacgUGCCG-ACCGUGACGCCg -3'
miRNA:   3'- agGUGCCG-----AUGGCgUGGUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 5870 0.68 0.473705
Target:  5'- gCCACGcccguggugccGCUGCCcaugcaguuguccaGCACCGUGuCGCCUu -3'
miRNA:   3'- aGGUGC-----------CGAUGG--------------CGUGGUACuGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 39631 0.68 0.486894
Target:  5'- aUCCuaGCGGCcgACUGCugCcgGACGCg- -3'
miRNA:   3'- -AGG--UGCCGa-UGGCGugGuaCUGUGgg -5'
17059 5' -56.6 NC_004333.2 + 8868 0.69 0.427606
Target:  5'- aUCGCGGCUGCgGCGCgGUuagccgcGCACCUu -3'
miRNA:   3'- aGGUGCCGAUGgCGUGgUAc------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 22066 0.69 0.40881
Target:  5'- -gCACGGCgcguaGCGCCAggaaagaGGCGCCCa -3'
miRNA:   3'- agGUGCCGaugg-CGUGGUa------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 6048 0.71 0.330932
Target:  5'- gCCAUGGCUuCCGCGCUuUGagaacaucGCAUCCg -3'
miRNA:   3'- aGGUGCCGAuGGCGUGGuAC--------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 14843 0.73 0.238678
Target:  5'- aCCACGGCgUGCCG-AUCAgaaUGACGCCg -3'
miRNA:   3'- aGGUGCCG-AUGGCgUGGU---ACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 29985 0.66 0.593093
Target:  5'- gCCAcCGGC-GCCgagcgcgaGCACCAUGcgGCGCCg -3'
miRNA:   3'- aGGU-GCCGaUGG--------CGUGGUAC--UGUGGg -5'
17059 5' -56.6 NC_004333.2 + 48113 0.66 0.582198
Target:  5'- -gCGCGcGC-ACCGCGCCGgcaugGugACCg -3'
miRNA:   3'- agGUGC-CGaUGGCGUGGUa----CugUGGg -5'
17059 5' -56.6 NC_004333.2 + 47476 0.67 0.560539
Target:  5'- cCgGCGGCgacUGCCGCGCUgaacgaGGCGCCg -3'
miRNA:   3'- aGgUGCCG---AUGGCGUGGua----CUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 32747 0.67 0.549791
Target:  5'- gUCACGcgcaggucGCUGCCGCcgGCCAUaagcgcGGCACCUu -3'
miRNA:   3'- aGGUGC--------CGAUGGCG--UGGUA------CUGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.