miRNA display CGI


Results 41 - 60 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17059 5' -56.6 NC_004333.2 + 6048 0.71 0.330932
Target:  5'- gCCAUGGCUuCCGCGCUuUGagaacaucGCAUCCg -3'
miRNA:   3'- aGGUGCCGAuGGCGUGGuAC--------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 29985 0.66 0.593093
Target:  5'- gCCAcCGGC-GCCgagcgcgaGCACCAUGcgGCGCCg -3'
miRNA:   3'- aGGU-GCCGaUGG--------CGUGGUAC--UGUGGg -5'
17059 5' -56.6 NC_004333.2 + 29509 0.66 0.636914
Target:  5'- uUCCAC-GCUuuaCGCGCUuuGUGACACUUc -3'
miRNA:   3'- -AGGUGcCGAug-GCGUGG--UACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 38612 0.66 0.625941
Target:  5'- gCCG-GGCgcGCCGCugcCCGUGGUGCCCg -3'
miRNA:   3'- aGGUgCCGa-UGGCGu--GGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 4208 0.66 0.614974
Target:  5'- gCCugGauuuGCaGCUGCGCguUGACGCUCg -3'
miRNA:   3'- aGGugC----CGaUGGCGUGguACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 48113 0.66 0.582198
Target:  5'- -gCGCGcGC-ACCGCGCCGgcaugGugACCg -3'
miRNA:   3'- agGUGC-CGaUGGCGUGGUa----CugUGGg -5'
17059 5' -56.6 NC_004333.2 + 40099 0.67 0.560539
Target:  5'- aUCCauGCGGCcaagGCgGCAUgAUGGCACgCu -3'
miRNA:   3'- -AGG--UGCCGa---UGgCGUGgUACUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 32747 0.67 0.549791
Target:  5'- gUCACGcgcaggucGCUGCCGCcgGCCAUaagcgcGGCACCUu -3'
miRNA:   3'- aGGUGC--------CGAUGGCG--UGGUA------CUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 22613 0.68 0.465678
Target:  5'- gUCCGuCGGgUucgUCGCGCCugugcgcuggaugAUGACGCCCa -3'
miRNA:   3'- -AGGU-GCCgAu--GGCGUGG-------------UACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 20818 1.13 0.000352
Target:  5'- uUCCACGGCUACCGCACCAUGACACCCa -3'
miRNA:   3'- -AGGUGCCGAUGGCGUGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 19950 0.67 0.528497
Target:  5'- gUCACGGUcACgugaCGCGCCcgGACGCgCa -3'
miRNA:   3'- aGGUGCCGaUG----GCGUGGuaCUGUGgG- -5'
17059 5' -56.6 NC_004333.2 + 31119 0.75 0.198533
Target:  5'- -gCGCGGCUggaacACCGCGagCAUGACGCCa -3'
miRNA:   3'- agGUGCCGA-----UGGCGUg-GUACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 21737 0.74 0.220119
Target:  5'- gCCAgguCGGCacGCCGCacaauugACCAUGACGCCUa -3'
miRNA:   3'- aGGU---GCCGa-UGGCG-------UGGUACUGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 12221 0.66 0.614974
Target:  5'- cUCgACGGCUugaaugcgcagAUCGCGCuCAUGACgACUg -3'
miRNA:   3'- -AGgUGCCGA-----------UGGCGUG-GUACUG-UGGg -5'
17059 5' -56.6 NC_004333.2 + 1271 0.66 0.593093
Target:  5'- cUCGCGGC-GCUGCAgCAUGaacagcagGCGCUCg -3'
miRNA:   3'- aGGUGCCGaUGGCGUgGUAC--------UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 33987 0.66 0.593093
Target:  5'- gUCAU-GCUGCCGCAUCccGACgagcgACCCg -3'
miRNA:   3'- aGGUGcCGAUGGCGUGGuaCUG-----UGGG- -5'
17059 5' -56.6 NC_004333.2 + 38578 0.68 0.486894
Target:  5'- -aC-CGGCcgaUGCCGCGCCGgcUGGCGCUg -3'
miRNA:   3'- agGuGCCG---AUGGCGUGGU--ACUGUGGg -5'
17059 5' -56.6 NC_004333.2 + 54 0.68 0.497156
Target:  5'- uUCgACGGUcaccaUGCCgGCGCgGUGcgcGCGCCCg -3'
miRNA:   3'- -AGgUGCCG-----AUGG-CGUGgUAC---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 27174 0.68 0.497156
Target:  5'- cCCgugACGGCUGCCacGCGCUcgaaacGCACCCa -3'
miRNA:   3'- aGG---UGCCGAUGG--CGUGGuac---UGUGGG- -5'
17059 5' -56.6 NC_004333.2 + 46892 0.68 0.497156
Target:  5'- aUCGCGuaacGCaACCGCGCCAggcGGCGCgCCa -3'
miRNA:   3'- aGGUGC----CGaUGGCGUGGUa--CUGUG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.