Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17059 | 5' | -56.6 | NC_004333.2 | + | 2787 | 0.67 | 0.571344 |
Target: 5'- gUCUGCGGCcuUGCCG-ACC-UGGCGCUg -3' miRNA: 3'- -AGGUGCCG--AUGGCgUGGuACUGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 36443 | 0.67 | 0.571344 |
Target: 5'- gCCGguCGGCUGCCGgACaucgcgcagGACGCCa -3' miRNA: 3'- aGGU--GCCGAUGGCgUGgua------CUGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 18109 | 0.66 | 0.604022 |
Target: 5'- gCUACGGCaucgacCCGCGCUuUGGCACg- -3' miRNA: 3'- aGGUGCCGau----GGCGUGGuACUGUGgg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 45583 | 0.66 | 0.613878 |
Target: 5'- -aUugGGCgaccuucacgACCGCcuggacgGCCGUGAUugCCg -3' miRNA: 3'- agGugCCGa---------UGGCG-------UGGUACUGugGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 12221 | 0.66 | 0.614974 |
Target: 5'- cUCgACGGCUugaaugcgcagAUCGCGCuCAUGACgACUg -3' miRNA: 3'- -AGgUGCCGA-----------UGGCGUG-GUACUG-UGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 14724 | 0.66 | 0.614974 |
Target: 5'- gCC-CGGCgcGCCGCuGCCAauGCugCCg -3' miRNA: 3'- aGGuGCCGa-UGGCG-UGGUacUGugGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 15718 | 0.66 | 0.625941 |
Target: 5'- gCUGCGGCUcgucGCgGCGCUgaagGGCGCCg -3' miRNA: 3'- aGGUGCCGA----UGgCGUGGua--CUGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 21635 | 0.66 | 0.625941 |
Target: 5'- -gCGCgGGCUccgugcaguucGCCGCACCugucGGCGCgCCg -3' miRNA: 3'- agGUG-CCGA-----------UGGCGUGGua--CUGUG-GG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 34748 | 0.66 | 0.625941 |
Target: 5'- aUCCAUgaucaGGCguucgGCCGCGC----GCACCCg -3' miRNA: 3'- -AGGUG-----CCGa----UGGCGUGguacUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 42407 | 0.66 | 0.636914 |
Target: 5'- -gCGagaGGCUAUCG-ACCGUGACAUUCc -3' miRNA: 3'- agGUg--CCGAUGGCgUGGUACUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 2604 | 0.66 | 0.604022 |
Target: 5'- aCCG-GGCUGgucgaGCGCCAUGAgCACCg -3' miRNA: 3'- aGGUgCCGAUgg---CGUGGUACU-GUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 28601 | 0.66 | 0.593093 |
Target: 5'- aUCGCGcGCgauuccccuugUGCCGCGCCGaccgugcgaccGGCGCCCa -3' miRNA: 3'- aGGUGC-CG-----------AUGGCGUGGUa----------CUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 38708 | 0.67 | 0.571344 |
Target: 5'- cUCgGCGGCggUGCgGCACCc--GCGCCUg -3' miRNA: 3'- -AGgUGCCG--AUGgCGUGGuacUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 15461 | 0.67 | 0.571344 |
Target: 5'- cUCGcCGGCUAUCGCuGCCGUGuuaaACUCg -3' miRNA: 3'- aGGU-GCCGAUGGCG-UGGUACug--UGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 19197 | 0.67 | 0.571344 |
Target: 5'- aCC-CGGCgGCCGCGCaacUGAuCGCCg -3' miRNA: 3'- aGGuGCCGaUGGCGUGgu-ACU-GUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 27529 | 0.66 | 0.582198 |
Target: 5'- gCCACuGGCgca-GCGCCGUugcGACGCUCg -3' miRNA: 3'- aGGUG-CCGauggCGUGGUA---CUGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 33987 | 0.66 | 0.593093 |
Target: 5'- gUCAU-GCUGCCGCAUCccGACgagcgACCCg -3' miRNA: 3'- aGGUGcCGAUGGCGUGGuaCUG-----UGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 1271 | 0.66 | 0.593093 |
Target: 5'- cUCGCGGC-GCUGCAgCAUGaacagcagGCGCUCg -3' miRNA: 3'- aGGUGCCGaUGGCGUgGUAC--------UGUGGG- -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 21017 | 0.66 | 0.593093 |
Target: 5'- -nCAUGGCUGaucgCGCGCC--GACACCa -3' miRNA: 3'- agGUGCCGAUg---GCGUGGuaCUGUGGg -5' |
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17059 | 5' | -56.6 | NC_004333.2 | + | 47470 | 0.66 | 0.593093 |
Target: 5'- gCCACGGCgcucgcgggcgGCgGCACgAUcGCGCUCa -3' miRNA: 3'- aGGUGCCGa----------UGgCGUGgUAcUGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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