Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1706 | 3' | -67.3 | NC_001347.2 | + | 114906 | 0.69 | 0.313956 |
Target: 5'- aGCCCagAGGCCGUacuGGCCGCCcgcGCCc- -3' miRNA: 3'- aCGGGcgUCCGGCA---CCGGCGG---CGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 71646 | 0.69 | 0.313956 |
Target: 5'- cGCUaCGCAu-CCGUGGCCGCgGCCGg -3' miRNA: 3'- aCGG-GCGUccGGCACCGGCGgCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 157522 | 0.69 | 0.320618 |
Target: 5'- cUGUCUGCAcaCCGUGGCCGuCCGCaCGa -3' miRNA: 3'- -ACGGGCGUccGGCACCGGC-GGCG-GUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 97601 | 0.69 | 0.327384 |
Target: 5'- gUGUCUG-GGGCCG-GuGCUGCCGCCGUc -3' miRNA: 3'- -ACGGGCgUCCGGCaC-CGGCGGCGGUA- -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 116887 | 0.69 | 0.327384 |
Target: 5'- cGCCCGCGcGCCccccgGGCaaccCGCCGCCGg -3' miRNA: 3'- aCGGGCGUcCGGca---CCG----GCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 76614 | 0.69 | 0.334256 |
Target: 5'- -cCUCGCAGGCgGcGGCUGCgGCCGc -3' miRNA: 3'- acGGGCGUCCGgCaCCGGCGgCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 200317 | 0.69 | 0.334256 |
Target: 5'- cGCaucaaCGCAGGCCagguguugcccGUGGUCugGCCGCCGg -3' miRNA: 3'- aCGg----GCGUCCGG-----------CACCGG--CGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 98204 | 0.7 | 0.282226 |
Target: 5'- gGCCCGauguGGCUGcGGCCGCCGagcaCAa -3' miRNA: 3'- aCGGGCgu--CCGGCaCCGGCGGCg---GUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 126868 | 0.7 | 0.264437 |
Target: 5'- aGCCCGCAcggcuuggggcuGGCCGgcuacGGCgGCCGCa-- -3' miRNA: 3'- aCGGGCGU------------CCGGCa----CCGgCGGCGgua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 158185 | 0.71 | 0.247569 |
Target: 5'- cGCUCGCugguGGCCGUGGuCUGUCGgCAg -3' miRNA: 3'- aCGGGCGu---CCGGCACC-GGCGGCgGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 81607 | 0.71 | 0.24054 |
Target: 5'- cGCUCGCGaaaaGCCGUGGCauugagacgcacggCGCCGCCGc -3' miRNA: 3'- aCGGGCGUc---CGGCACCG--------------GCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 68729 | 0.72 | 0.197706 |
Target: 5'- cGCUCGUcggAGGCCGUGGagcgagUGCCGCCGc -3' miRNA: 3'- aCGGGCG---UCCGGCACCg-----GCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 128118 | 0.72 | 0.202269 |
Target: 5'- cUGCCCGCGuuGCCccuGUcGCCGCCGCCAc -3' miRNA: 3'- -ACGGGCGUc-CGG---CAcCGGCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 63092 | 0.72 | 0.21651 |
Target: 5'- gGCUCgGCAagugccGCCGUGGCCGCCGCgGc -3' miRNA: 3'- aCGGG-CGUc-----CGGCACCGGCGGCGgUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 17119 | 0.72 | 0.21651 |
Target: 5'- aUGCCgguCGUccGCCGUcGGCCGCCGCCc- -3' miRNA: 3'- -ACGG---GCGucCGGCA-CCGGCGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 2394 | 0.73 | 0.184552 |
Target: 5'- cGCCCGCcgccgAGGCCGcgcggcGGCUGCUGCCc- -3' miRNA: 3'- aCGGGCG-----UCCGGCa-----CCGGCGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 67351 | 0.73 | 0.168219 |
Target: 5'- -cCCCGCAGccgccGCCGUcGCCGCCGCCu- -3' miRNA: 3'- acGGGCGUC-----CGGCAcCGGCGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 164668 | 0.74 | 0.156832 |
Target: 5'- aGCUCGUcgaaggacGGcGCCGUGGCCGuuGCCGc -3' miRNA: 3'- aCGGGCG--------UC-CGGCACCGGCggCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 156641 | 0.75 | 0.132931 |
Target: 5'- gGCgCCGCugccGGGCCucGGCCGCCGCCGc -3' miRNA: 3'- aCG-GGCG----UCCGGcaCCGGCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 78396 | 0.75 | 0.126745 |
Target: 5'- gGaCCCGCGGGCCacgucgGGCUGCUGCCGc -3' miRNA: 3'- aC-GGGCGUCCGGca----CCGGCGGCGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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