miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1706 3' -67.3 NC_001347.2 + 92250 1.05 0.000775
Target:  5'- cUGCCCGCAGGCCGUGGCCGCCGCCAUg -3'
miRNA:   3'- -ACGGGCGUCCGGCACCGGCGGCGGUA- -5'
1706 3' -67.3 NC_001347.2 + 85316 0.79 0.070751
Target:  5'- cUGcCCCGCAGGUgGUGaucagcGCCGCCGCCAg -3'
miRNA:   3'- -AC-GGGCGUCCGgCAC------CGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 65882 0.76 0.109752
Target:  5'- cGCUgGCGGGCCGaccGCCGCCGCCc- -3'
miRNA:   3'- aCGGgCGUCCGGCac-CGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 78396 0.75 0.126745
Target:  5'- gGaCCCGCGGGCCacgucgGGCUGCUGCCGc -3'
miRNA:   3'- aC-GGGCGUCCGGca----CCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 156641 0.75 0.132931
Target:  5'- gGCgCCGCugccGGGCCucGGCCGCCGCCGc -3'
miRNA:   3'- aCG-GGCG----UCCGGcaCCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 164668 0.74 0.156832
Target:  5'- aGCUCGUcgaaggacGGcGCCGUGGCCGuuGCCGc -3'
miRNA:   3'- aCGGGCG--------UC-CGGCACCGGCggCGGUa -5'
1706 3' -67.3 NC_001347.2 + 2394 0.73 0.184552
Target:  5'- cGCCCGCcgccgAGGCCGcgcggcGGCUGCUGCCc- -3'
miRNA:   3'- aCGGGCG-----UCCGGCa-----CCGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 67351 0.73 0.168219
Target:  5'- -cCCCGCAGccgccGCCGUcGCCGCCGCCu- -3'
miRNA:   3'- acGGGCGUC-----CGGCAcCGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 128118 0.72 0.202269
Target:  5'- cUGCCCGCGuuGCCccuGUcGCCGCCGCCAc -3'
miRNA:   3'- -ACGGGCGUc-CGG---CAcCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 17119 0.72 0.21651
Target:  5'- aUGCCgguCGUccGCCGUcGGCCGCCGCCc- -3'
miRNA:   3'- -ACGG---GCGucCGGCA-CCGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 68729 0.72 0.197706
Target:  5'- cGCUCGUcggAGGCCGUGGagcgagUGCCGCCGc -3'
miRNA:   3'- aCGGGCG---UCCGGCACCg-----GCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 63092 0.72 0.21651
Target:  5'- gGCUCgGCAagugccGCCGUGGCCGCCGCgGc -3'
miRNA:   3'- aCGGG-CGUc-----CGGCACCGGCGGCGgUa -5'
1706 3' -67.3 NC_001347.2 + 81607 0.71 0.24054
Target:  5'- cGCUCGCGaaaaGCCGUGGCauugagacgcacggCGCCGCCGc -3'
miRNA:   3'- aCGGGCGUc---CGGCACCG--------------GCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 158185 0.71 0.247569
Target:  5'- cGCUCGCugguGGCCGUGGuCUGUCGgCAg -3'
miRNA:   3'- aCGGGCGu---CCGGCACC-GGCGGCgGUa -5'
1706 3' -67.3 NC_001347.2 + 126868 0.7 0.264437
Target:  5'- aGCCCGCAcggcuuggggcuGGCCGgcuacGGCgGCCGCa-- -3'
miRNA:   3'- aCGGGCGU------------CCGGCa----CCGgCGGCGgua -5'
1706 3' -67.3 NC_001347.2 + 98204 0.7 0.282226
Target:  5'- gGCCCGauguGGCUGcGGCCGCCGagcaCAa -3'
miRNA:   3'- aCGGGCgu--CCGGCaCCGGCGGCg---GUa -5'
1706 3' -67.3 NC_001347.2 + 78969 0.69 0.294604
Target:  5'- -aCCUGCAgcucuccuucGGCgagauCGUGGCCGCCGCCu- -3'
miRNA:   3'- acGGGCGU----------CCG-----GCACCGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 156989 0.69 0.294604
Target:  5'- cGCgaCCGCagucuGGGCCGUGGCUGcCCGCgCGc -3'
miRNA:   3'- aCG--GGCG-----UCCGGCACCGGC-GGCG-GUa -5'
1706 3' -67.3 NC_001347.2 + 67398 0.69 0.3074
Target:  5'- cGCCCGC--GCUGUGGgCGCUGCUg- -3'
miRNA:   3'- aCGGGCGucCGGCACCgGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 37068 0.69 0.294604
Target:  5'- gUGCUgGC-GGCCGUGGCCuGUgGCCc- -3'
miRNA:   3'- -ACGGgCGuCCGGCACCGG-CGgCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.