miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1706 3' -67.3 NC_001347.2 + 71646 0.69 0.313956
Target:  5'- cGCUaCGCAu-CCGUGGCCGCgGCCGg -3'
miRNA:   3'- aCGG-GCGUccGGCACCGGCGgCGGUa -5'
1706 3' -67.3 NC_001347.2 + 67398 0.69 0.3074
Target:  5'- cGCCCGC--GCUGUGGgCGCUGCUg- -3'
miRNA:   3'- aCGGGCGucCGGCACCgGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 78969 0.69 0.294604
Target:  5'- -aCCUGCAgcucuccuucGGCgagauCGUGGCCGCCGCCu- -3'
miRNA:   3'- acGGGCGU----------CCG-----GCACCGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 156989 0.69 0.294604
Target:  5'- cGCgaCCGCagucuGGGCCGUGGCUGcCCGCgCGc -3'
miRNA:   3'- aCG--GGCG-----UCCGGCACCGGC-GGCG-GUa -5'
1706 3' -67.3 NC_001347.2 + 114906 0.69 0.313956
Target:  5'- aGCCCagAGGCCGUacuGGCCGCCcgcGCCc- -3'
miRNA:   3'- aCGGGcgUCCGGCA---CCGGCGG---CGGua -5'
1706 3' -67.3 NC_001347.2 + 97601 0.69 0.327384
Target:  5'- gUGUCUG-GGGCCG-GuGCUGCCGCCGUc -3'
miRNA:   3'- -ACGGGCgUCCGGCaC-CGGCGGCGGUA- -5'
1706 3' -67.3 NC_001347.2 + 157522 0.69 0.320618
Target:  5'- cUGUCUGCAcaCCGUGGCCGuCCGCaCGa -3'
miRNA:   3'- -ACGGGCGUccGGCACCGGC-GGCG-GUa -5'
1706 3' -67.3 NC_001347.2 + 200317 0.69 0.334256
Target:  5'- cGCaucaaCGCAGGCCagguguugcccGUGGUCugGCCGCCGg -3'
miRNA:   3'- aCGg----GCGUCCGG-----------CACCGG--CGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 101987 0.68 0.348314
Target:  5'- cGCUuuCGCAGGCCGgGGCgcacagcuuaaCGCCGCUg- -3'
miRNA:   3'- aCGG--GCGUCCGGCaCCG-----------GCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 197033 0.68 0.341233
Target:  5'- cGCgCCGCAGGaucgcaCGcGGCUGCCGCa-- -3'
miRNA:   3'- aCG-GGCGUCCg-----GCaCCGGCGGCGgua -5'
1706 3' -67.3 NC_001347.2 + 166157 0.68 0.3555
Target:  5'- gUGCCCGCGGGCCa-GGUcauCGgCGCUAg -3'
miRNA:   3'- -ACGGGCGUCCGGcaCCG---GCgGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 194468 0.68 0.348314
Target:  5'- cGCCacgGCGGGUCGuUGGCUcccgcugugcugGCCGCCGc -3'
miRNA:   3'- aCGGg--CGUCCGGC-ACCGG------------CGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 153787 0.68 0.3555
Target:  5'- cGCCgCuCAGGCCGUGGUaguccgaGUCGCCu- -3'
miRNA:   3'- aCGG-GcGUCCGGCACCGg------CGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 67634 0.68 0.362789
Target:  5'- gUGUCCaGCGgcagcgacaugcGGCCGcuGCCGCCGCCAc -3'
miRNA:   3'- -ACGGG-CGU------------CCGGCacCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 187349 0.68 0.377677
Target:  5'- gUGCgUUGCGuGGCCGUGGCgCGUCGCgGc -3'
miRNA:   3'- -ACG-GGCGU-CCGGCACCG-GCGGCGgUa -5'
1706 3' -67.3 NC_001347.2 + 84617 0.68 0.377677
Target:  5'- aGCCgucgugGguGGCCucgcgGUGGCUGCCGCUAc -3'
miRNA:   3'- aCGGg-----CguCCGG-----CACCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 195665 0.67 0.39297
Target:  5'- cGCCCG-AGGaUC-UGGCgGCCGCCGg -3'
miRNA:   3'- aCGGGCgUCC-GGcACCGgCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 79866 0.67 0.399981
Target:  5'- gGCCCGUGGGCCuG-GGCCuGCuagacgugcucaaCGCCAa -3'
miRNA:   3'- aCGGGCGUCCGG-CaCCGG-CG-------------GCGGUa -5'
1706 3' -67.3 NC_001347.2 + 128337 0.67 0.44118
Target:  5'- -aCCCGCG---UGUGGCCGCCGCUg- -3'
miRNA:   3'- acGGGCGUccgGCACCGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 39354 0.67 0.436208
Target:  5'- gGCCCGCggGGuucuacccgguggacGCCGUGGCCcggcGUCGUCGUa -3'
miRNA:   3'- aCGGGCG--UC---------------CGGCACCGG----CGGCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.