miRNA display CGI


Results 41 - 60 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1706 3' -67.3 NC_001347.2 + 136088 0.67 0.432912
Target:  5'- gGCCCGCGGacggaccggcGCCG-GGCCuCgGCCGg -3'
miRNA:   3'- aCGGGCGUC----------CGGCaCCGGcGgCGGUa -5'
1706 3' -67.3 NC_001347.2 + 78708 0.67 0.440349
Target:  5'- cGUCCGCuGGCgGUGGaagacaaCCGCCuggugGCCAa -3'
miRNA:   3'- aCGGGCGuCCGgCACC-------GGCGG-----CGGUa -5'
1706 3' -67.3 NC_001347.2 + 189884 0.67 0.44118
Target:  5'- cUGUCCgGCAGcaGCCG-GGCCGCCucgaccacGCCGa -3'
miRNA:   3'- -ACGGG-CGUC--CGGCaCCGGCGG--------CGGUa -5'
1706 3' -67.3 NC_001347.2 + 182118 0.67 0.44118
Target:  5'- cGuCCCGCGGGUcuuCGacGUCGCUGCCGUa -3'
miRNA:   3'- aC-GGGCGUCCG---GCacCGGCGGCGGUA- -5'
1706 3' -67.3 NC_001347.2 + 136485 0.67 0.424734
Target:  5'- -uCCCGCGGGCCcUGGCCcGCgcaugCGCCc- -3'
miRNA:   3'- acGGGCGUCCGGcACCGG-CG-----GCGGua -5'
1706 3' -67.3 NC_001347.2 + 89677 0.67 0.424734
Target:  5'- cGCUCGUcucgaccgcacaAGcGCCGgccccGCCGCCGCCAc -3'
miRNA:   3'- aCGGGCG------------UC-CGGCac---CGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 1065 0.67 0.416649
Target:  5'- -cCCCGCGGGCCGccGGgCGCC-CCu- -3'
miRNA:   3'- acGGGCGUCCGGCa-CCgGCGGcGGua -5'
1706 3' -67.3 NC_001347.2 + 195665 0.67 0.39297
Target:  5'- cGCCCG-AGGaUC-UGGCgGCCGCCGg -3'
miRNA:   3'- aCGGGCgUCC-GGcACCGgCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 156677 0.67 0.400765
Target:  5'- aUGgCgGCGGGUCGUGGCgGCUGUg-- -3'
miRNA:   3'- -ACgGgCGUCCGGCACCGgCGGCGgua -5'
1706 3' -67.3 NC_001347.2 + 79866 0.67 0.399981
Target:  5'- gGCCCGUGGGCCuG-GGCCuGCuagacgugcucaaCGCCAa -3'
miRNA:   3'- aCGGGCGUCCGG-CaCCGG-CG-------------GCGGUa -5'
1706 3' -67.3 NC_001347.2 + 88332 0.67 0.400765
Target:  5'- gGCagCGCAaGCCGUGGuaaCCGUCGCCGc -3'
miRNA:   3'- aCGg-GCGUcCGGCACC---GGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 196551 0.67 0.400765
Target:  5'- -cCCCGCGGGCUG-GGCCugUGCCAa -3'
miRNA:   3'- acGGGCGUCCGGCaCCGGcgGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 196950 0.67 0.408659
Target:  5'- cUGCgCCG-GGGCUGUcGCgCGCCGCCGa -3'
miRNA:   3'- -ACG-GGCgUCCGGCAcCG-GCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 87583 0.67 0.416649
Target:  5'- aGCCCGU-GGCCGUGaGCaGaCCGCgGUg -3'
miRNA:   3'- aCGGGCGuCCGGCAC-CGgC-GGCGgUA- -5'
1706 3' -67.3 NC_001347.2 + 222751 0.67 0.416649
Target:  5'- cGCugCCGC-GGCCauuGCCGCCGCCGc -3'
miRNA:   3'- aCG--GGCGuCCGGcacCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 13521 0.66 0.457981
Target:  5'- -aCCCGcCGGGCgGcccgGGCCGCCGUg-- -3'
miRNA:   3'- acGGGC-GUCCGgCa---CCGGCGGCGgua -5'
1706 3' -67.3 NC_001347.2 + 96907 0.66 0.466509
Target:  5'- aGUCgGCuaacaaAGcCCG-GGCCGCCGCCAg -3'
miRNA:   3'- aCGGgCG------UCcGGCaCCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 31674 0.66 0.483807
Target:  5'- gGUCgGCuGGUCG-GGCCGUCGCgGa -3'
miRNA:   3'- aCGGgCGuCCGGCaCCGGCGGCGgUa -5'
1706 3' -67.3 NC_001347.2 + 208715 0.66 0.457981
Target:  5'- gGCCaC-CAGcGCCGUGGUCucgGUCGCCAg -3'
miRNA:   3'- aCGG-GcGUC-CGGCACCGG---CGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 38069 0.66 0.449537
Target:  5'- cGCCCGCGcGCagaaaGUGcgacagcuCCGCCGCCAg -3'
miRNA:   3'- aCGGGCGUcCGg----CACc-------GGCGGCGGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.