Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1706 | 3' | -67.3 | NC_001347.2 | + | 1065 | 0.67 | 0.416649 |
Target: 5'- -cCCCGCGGGCCGccGGgCGCC-CCu- -3' miRNA: 3'- acGGGCGUCCGGCa-CCgGCGGcGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 196950 | 0.67 | 0.408659 |
Target: 5'- cUGCgCCG-GGGCUGUcGCgCGCCGCCGa -3' miRNA: 3'- -ACG-GGCgUCCGGCAcCG-GCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 196551 | 0.67 | 0.400765 |
Target: 5'- -cCCCGCGGGCUG-GGCCugUGCCAa -3' miRNA: 3'- acGGGCGUCCGGCaCCGGcgGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 156677 | 0.67 | 0.400765 |
Target: 5'- aUGgCgGCGGGUCGUGGCgGCUGUg-- -3' miRNA: 3'- -ACgGgCGUCCGGCACCGgCGGCGgua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 88332 | 0.67 | 0.400765 |
Target: 5'- gGCagCGCAaGCCGUGGuaaCCGUCGCCGc -3' miRNA: 3'- aCGg-GCGUcCGGCACC---GGCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 79866 | 0.67 | 0.399981 |
Target: 5'- gGCCCGUGGGCCuG-GGCCuGCuagacgugcucaaCGCCAa -3' miRNA: 3'- aCGGGCGUCCGG-CaCCGG-CG-------------GCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 195665 | 0.67 | 0.39297 |
Target: 5'- cGCCCG-AGGaUC-UGGCgGCCGCCGg -3' miRNA: 3'- aCGGGCgUCC-GGcACCGgCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 84617 | 0.68 | 0.377677 |
Target: 5'- aGCCgucgugGguGGCCucgcgGUGGCUGCCGCUAc -3' miRNA: 3'- aCGGg-----CguCCGG-----CACCGGCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 187349 | 0.68 | 0.377677 |
Target: 5'- gUGCgUUGCGuGGCCGUGGCgCGUCGCgGc -3' miRNA: 3'- -ACG-GGCGU-CCGGCACCG-GCGGCGgUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 67634 | 0.68 | 0.362789 |
Target: 5'- gUGUCCaGCGgcagcgacaugcGGCCGcuGCCGCCGCCAc -3' miRNA: 3'- -ACGGG-CGU------------CCGGCacCGGCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 153787 | 0.68 | 0.3555 |
Target: 5'- cGCCgCuCAGGCCGUGGUaguccgaGUCGCCu- -3' miRNA: 3'- aCGG-GcGUCCGGCACCGg------CGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 166157 | 0.68 | 0.3555 |
Target: 5'- gUGCCCGCGGGCCa-GGUcauCGgCGCUAg -3' miRNA: 3'- -ACGGGCGUCCGGcaCCG---GCgGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 194468 | 0.68 | 0.348314 |
Target: 5'- cGCCacgGCGGGUCGuUGGCUcccgcugugcugGCCGCCGc -3' miRNA: 3'- aCGGg--CGUCCGGC-ACCGG------------CGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 101987 | 0.68 | 0.348314 |
Target: 5'- cGCUuuCGCAGGCCGgGGCgcacagcuuaaCGCCGCUg- -3' miRNA: 3'- aCGG--GCGUCCGGCaCCG-----------GCGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 197033 | 0.68 | 0.341233 |
Target: 5'- cGCgCCGCAGGaucgcaCGcGGCUGCCGCa-- -3' miRNA: 3'- aCG-GGCGUCCg-----GCaCCGGCGGCGgua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 76614 | 0.69 | 0.334256 |
Target: 5'- -cCUCGCAGGCgGcGGCUGCgGCCGc -3' miRNA: 3'- acGGGCGUCCGgCaCCGGCGgCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 200317 | 0.69 | 0.334256 |
Target: 5'- cGCaucaaCGCAGGCCagguguugcccGUGGUCugGCCGCCGg -3' miRNA: 3'- aCGg----GCGUCCGG-----------CACCGG--CGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 116887 | 0.69 | 0.327384 |
Target: 5'- cGCCCGCGcGCCccccgGGCaaccCGCCGCCGg -3' miRNA: 3'- aCGGGCGUcCGGca---CCG----GCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 97601 | 0.69 | 0.327384 |
Target: 5'- gUGUCUG-GGGCCG-GuGCUGCCGCCGUc -3' miRNA: 3'- -ACGGGCgUCCGGCaC-CGGCGGCGGUA- -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 157522 | 0.69 | 0.320618 |
Target: 5'- cUGUCUGCAcaCCGUGGCCGuCCGCaCGa -3' miRNA: 3'- -ACGGGCGUccGGCACCGGC-GGCG-GUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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