Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1706 | 3' | -67.3 | NC_001347.2 | + | 1065 | 0.67 | 0.416649 |
Target: 5'- -cCCCGCGGGCCGccGGgCGCC-CCu- -3' miRNA: 3'- acGGGCGUCCGGCa-CCgGCGGcGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 1932 | 0.67 | 0.432912 |
Target: 5'- cUGCCCGCGcgguGGCUG-GGCUGCgCGgCGg -3' miRNA: 3'- -ACGGGCGU----CCGGCaCCGGCG-GCgGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 2084 | 0.66 | 0.49257 |
Target: 5'- gUGCcuCCGCA-GCCGUacGG-CGCCGCCGg -3' miRNA: 3'- -ACG--GGCGUcCGGCA--CCgGCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 2394 | 0.73 | 0.184552 |
Target: 5'- cGCCCGCcgccgAGGCCGcgcggcGGCUGCUGCCc- -3' miRNA: 3'- aCGGGCG-----UCCGGCa-----CCGGCGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 13521 | 0.66 | 0.457981 |
Target: 5'- -aCCCGcCGGGCgGcccgGGCCGCCGUg-- -3' miRNA: 3'- acGGGC-GUCCGgCa---CCGGCGGCGgua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 17119 | 0.72 | 0.21651 |
Target: 5'- aUGCCgguCGUccGCCGUcGGCCGCCGCCc- -3' miRNA: 3'- -ACGG---GCGucCGGCA-CCGGCGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 31674 | 0.66 | 0.483807 |
Target: 5'- gGUCgGCuGGUCG-GGCCGUCGCgGa -3' miRNA: 3'- aCGGgCGuCCGGCaCCGGCGGCGgUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 37068 | 0.69 | 0.294604 |
Target: 5'- gUGCUgGC-GGCCGUGGCCuGUgGCCc- -3' miRNA: 3'- -ACGGgCGuCCGGCACCGG-CGgCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 38069 | 0.66 | 0.449537 |
Target: 5'- cGCCCGCGcGCagaaaGUGcgacagcuCCGCCGCCAg -3' miRNA: 3'- aCGGGCGUcCGg----CACc-------GGCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 39354 | 0.67 | 0.436208 |
Target: 5'- gGCCCGCggGGuucuacccgguggacGCCGUGGCCcggcGUCGUCGUa -3' miRNA: 3'- aCGGGCG--UC---------------CGGCACCGG----CGGCGGUA- -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 63092 | 0.72 | 0.21651 |
Target: 5'- gGCUCgGCAagugccGCCGUGGCCGCCGCgGc -3' miRNA: 3'- aCGGG-CGUc-----CGGCACCGGCGGCGgUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 65882 | 0.76 | 0.109752 |
Target: 5'- cGCUgGCGGGCCGaccGCCGCCGCCc- -3' miRNA: 3'- aCGGgCGUCCGGCac-CGGCGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 67351 | 0.73 | 0.168219 |
Target: 5'- -cCCCGCAGccgccGCCGUcGCCGCCGCCu- -3' miRNA: 3'- acGGGCGUC-----CGGCAcCGGCGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 67398 | 0.69 | 0.3074 |
Target: 5'- cGCCCGC--GCUGUGGgCGCUGCUg- -3' miRNA: 3'- aCGGGCGucCGGCACCgGCGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 67634 | 0.68 | 0.362789 |
Target: 5'- gUGUCCaGCGgcagcgacaugcGGCCGcuGCCGCCGCCAc -3' miRNA: 3'- -ACGGG-CGU------------CCGGCacCGGCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 68729 | 0.72 | 0.197706 |
Target: 5'- cGCUCGUcggAGGCCGUGGagcgagUGCCGCCGc -3' miRNA: 3'- aCGGGCG---UCCGGCACCg-----GCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 71646 | 0.69 | 0.313956 |
Target: 5'- cGCUaCGCAu-CCGUGGCCGCgGCCGg -3' miRNA: 3'- aCGG-GCGUccGGCACCGGCGgCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 73717 | 0.69 | 0.3074 |
Target: 5'- gGUCCGCGGGCa----CCGCCGCCGg -3' miRNA: 3'- aCGGGCGUCCGgcaccGGCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 76614 | 0.69 | 0.334256 |
Target: 5'- -cCUCGCAGGCgGcGGCUGCgGCCGc -3' miRNA: 3'- acGGGCGUCCGgCaCCGGCGgCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 78396 | 0.75 | 0.126745 |
Target: 5'- gGaCCCGCGGGCCacgucgGGCUGCUGCCGc -3' miRNA: 3'- aC-GGGCGUCCGGca----CCGGCGGCGGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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