miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1706 3' -67.3 NC_001347.2 + 78708 0.67 0.440349
Target:  5'- cGUCCGCuGGCgGUGGaagacaaCCGCCuggugGCCAa -3'
miRNA:   3'- aCGGGCGuCCGgCACC-------GGCGG-----CGGUa -5'
1706 3' -67.3 NC_001347.2 + 78969 0.69 0.294604
Target:  5'- -aCCUGCAgcucuccuucGGCgagauCGUGGCCGCCGCCu- -3'
miRNA:   3'- acGGGCGU----------CCG-----GCACCGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 79866 0.67 0.399981
Target:  5'- gGCCCGUGGGCCuG-GGCCuGCuagacgugcucaaCGCCAa -3'
miRNA:   3'- aCGGGCGUCCGG-CaCCGG-CG-------------GCGGUa -5'
1706 3' -67.3 NC_001347.2 + 81607 0.71 0.24054
Target:  5'- cGCUCGCGaaaaGCCGUGGCauugagacgcacggCGCCGCCGc -3'
miRNA:   3'- aCGGGCGUc---CGGCACCG--------------GCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 84617 0.68 0.377677
Target:  5'- aGCCgucgugGguGGCCucgcgGUGGCUGCCGCUAc -3'
miRNA:   3'- aCGGg-----CguCCGG-----CACCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 85316 0.79 0.070751
Target:  5'- cUGcCCCGCAGGUgGUGaucagcGCCGCCGCCAg -3'
miRNA:   3'- -AC-GGGCGUCCGgCAC------CGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 87583 0.67 0.416649
Target:  5'- aGCCCGU-GGCCGUGaGCaGaCCGCgGUg -3'
miRNA:   3'- aCGGGCGuCCGGCAC-CGgC-GGCGgUA- -5'
1706 3' -67.3 NC_001347.2 + 88332 0.67 0.400765
Target:  5'- gGCagCGCAaGCCGUGGuaaCCGUCGCCGc -3'
miRNA:   3'- aCGg-GCGUcCGGCACC---GGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 89677 0.67 0.424734
Target:  5'- cGCUCGUcucgaccgcacaAGcGCCGgccccGCCGCCGCCAc -3'
miRNA:   3'- aCGGGCG------------UC-CGGCac---CGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 92250 1.05 0.000775
Target:  5'- cUGCCCGCAGGCCGUGGCCGCCGCCAUg -3'
miRNA:   3'- -ACGGGCGUCCGGCACCGGCGGCGGUA- -5'
1706 3' -67.3 NC_001347.2 + 96907 0.66 0.466509
Target:  5'- aGUCgGCuaacaaAGcCCG-GGCCGCCGCCAg -3'
miRNA:   3'- aCGGgCG------UCcGGCaCCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 97601 0.69 0.327384
Target:  5'- gUGUCUG-GGGCCG-GuGCUGCCGCCGUc -3'
miRNA:   3'- -ACGGGCgUCCGGCaC-CGGCGGCGGUA- -5'
1706 3' -67.3 NC_001347.2 + 98204 0.7 0.282226
Target:  5'- gGCCCGauguGGCUGcGGCCGCCGagcaCAa -3'
miRNA:   3'- aCGGGCgu--CCGGCaCCGGCGGCg---GUa -5'
1706 3' -67.3 NC_001347.2 + 101987 0.68 0.348314
Target:  5'- cGCUuuCGCAGGCCGgGGCgcacagcuuaaCGCCGCUg- -3'
miRNA:   3'- aCGG--GCGUCCGGCaCCG-----------GCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 114906 0.69 0.313956
Target:  5'- aGCCCagAGGCCGUacuGGCCGCCcgcGCCc- -3'
miRNA:   3'- aCGGGcgUCCGGCA---CCGGCGG---CGGua -5'
1706 3' -67.3 NC_001347.2 + 116887 0.69 0.327384
Target:  5'- cGCCCGCGcGCCccccgGGCaaccCGCCGCCGg -3'
miRNA:   3'- aCGGGCGUcCGGca---CCG----GCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 118531 0.66 0.483807
Target:  5'- gGCCCucggcguacuGCAGGCUGUgGGUgGCgUGCCAc -3'
miRNA:   3'- aCGGG----------CGUCCGGCA-CCGgCG-GCGGUa -5'
1706 3' -67.3 NC_001347.2 + 126868 0.7 0.264437
Target:  5'- aGCCCGCAcggcuuggggcuGGCCGgcuacGGCgGCCGCa-- -3'
miRNA:   3'- aCGGGCGU------------CCGGCa----CCGgCGGCGgua -5'
1706 3' -67.3 NC_001347.2 + 128118 0.72 0.202269
Target:  5'- cUGCCCGCGuuGCCccuGUcGCCGCCGCCAc -3'
miRNA:   3'- -ACGGGCGUc-CGG---CAcCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 128337 0.67 0.44118
Target:  5'- -aCCCGCG---UGUGGCCGCCGCUg- -3'
miRNA:   3'- acGGGCGUccgGCACCGGCGGCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.