Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1706 | 3' | -67.3 | NC_001347.2 | + | 136088 | 0.67 | 0.432912 |
Target: 5'- gGCCCGCGGacggaccggcGCCG-GGCCuCgGCCGg -3' miRNA: 3'- aCGGGCGUC----------CGGCaCCGGcGgCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 136485 | 0.67 | 0.424734 |
Target: 5'- -uCCCGCGGGCCcUGGCCcGCgcaugCGCCc- -3' miRNA: 3'- acGGGCGUCCGGcACCGG-CG-----GCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 149432 | 0.66 | 0.49257 |
Target: 5'- gUGCCCGacgaCAGcUCGUGGCCG-CGCUAUc -3' miRNA: 3'- -ACGGGC----GUCcGGCACCGGCgGCGGUA- -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 153787 | 0.68 | 0.3555 |
Target: 5'- cGCCgCuCAGGCCGUGGUaguccgaGUCGCCu- -3' miRNA: 3'- aCGG-GcGUCCGGCACCGg------CGGCGGua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 156641 | 0.75 | 0.132931 |
Target: 5'- gGCgCCGCugccGGGCCucGGCCGCCGCCGc -3' miRNA: 3'- aCG-GGCG----UCCGGcaCCGGCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 156677 | 0.67 | 0.400765 |
Target: 5'- aUGgCgGCGGGUCGUGGCgGCUGUg-- -3' miRNA: 3'- -ACgGgCGUCCGGCACCGgCGGCGgua -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 156989 | 0.69 | 0.294604 |
Target: 5'- cGCgaCCGCagucuGGGCCGUGGCUGcCCGCgCGc -3' miRNA: 3'- aCG--GGCG-----UCCGGCACCGGC-GGCG-GUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 157522 | 0.69 | 0.320618 |
Target: 5'- cUGUCUGCAcaCCGUGGCCGuCCGCaCGa -3' miRNA: 3'- -ACGGGCGUccGGCACCGGC-GGCG-GUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 158185 | 0.71 | 0.247569 |
Target: 5'- cGCUCGCugguGGCCGUGGuCUGUCGgCAg -3' miRNA: 3'- aCGGGCGu---CCGGCACC-GGCGGCgGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 164668 | 0.74 | 0.156832 |
Target: 5'- aGCUCGUcgaaggacGGcGCCGUGGCCGuuGCCGc -3' miRNA: 3'- aCGGGCG--------UC-CGGCACCGGCggCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 166157 | 0.68 | 0.3555 |
Target: 5'- gUGCCCGCGGGCCa-GGUcauCGgCGCUAg -3' miRNA: 3'- -ACGGGCGUCCGGcaCCG---GCgGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 182118 | 0.67 | 0.44118 |
Target: 5'- cGuCCCGCGGGUcuuCGacGUCGCUGCCGUa -3' miRNA: 3'- aC-GGGCGUCCG---GCacCGGCGGCGGUA- -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 185343 | 0.67 | 0.424734 |
Target: 5'- gGUCCGUGcGaGCa--GGCCGCCGCCGUg -3' miRNA: 3'- aCGGGCGU-C-CGgcaCCGGCGGCGGUA- -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 187349 | 0.68 | 0.377677 |
Target: 5'- gUGCgUUGCGuGGCCGUGGCgCGUCGCgGc -3' miRNA: 3'- -ACG-GGCGU-CCGGCACCG-GCGGCGgUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 189884 | 0.67 | 0.44118 |
Target: 5'- cUGUCCgGCAGcaGCCG-GGCCGCCucgaccacGCCGa -3' miRNA: 3'- -ACGGG-CGUC--CGGCaCCGGCGG--------CGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 194468 | 0.68 | 0.348314 |
Target: 5'- cGCCacgGCGGGUCGuUGGCUcccgcugugcugGCCGCCGc -3' miRNA: 3'- aCGGg--CGUCCGGC-ACCGG------------CGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 195665 | 0.67 | 0.39297 |
Target: 5'- cGCCCG-AGGaUC-UGGCgGCCGCCGg -3' miRNA: 3'- aCGGGCgUCC-GGcACCGgCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 196551 | 0.67 | 0.400765 |
Target: 5'- -cCCCGCGGGCUG-GGCCugUGCCAa -3' miRNA: 3'- acGGGCGUCCGGCaCCGGcgGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 196950 | 0.67 | 0.408659 |
Target: 5'- cUGCgCCG-GGGCUGUcGCgCGCCGCCGa -3' miRNA: 3'- -ACG-GGCgUCCGGCAcCG-GCGGCGGUa -5' |
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1706 | 3' | -67.3 | NC_001347.2 | + | 197033 | 0.68 | 0.341233 |
Target: 5'- cGCgCCGCAGGaucgcaCGcGGCUGCCGCa-- -3' miRNA: 3'- aCG-GGCGUCCg-----GCaCCGGCGGCGgua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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