miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1706 3' -67.3 NC_001347.2 + 79866 0.67 0.399981
Target:  5'- gGCCCGUGGGCCuG-GGCCuGCuagacgugcucaaCGCCAa -3'
miRNA:   3'- aCGGGCGUCCGG-CaCCGG-CG-------------GCGGUa -5'
1706 3' -67.3 NC_001347.2 + 78969 0.69 0.294604
Target:  5'- -aCCUGCAgcucuccuucGGCgagauCGUGGCCGCCGCCu- -3'
miRNA:   3'- acGGGCGU----------CCG-----GCACCGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 78708 0.67 0.440349
Target:  5'- cGUCCGCuGGCgGUGGaagacaaCCGCCuggugGCCAa -3'
miRNA:   3'- aCGGGCGuCCGgCACC-------GGCGG-----CGGUa -5'
1706 3' -67.3 NC_001347.2 + 78396 0.75 0.126745
Target:  5'- gGaCCCGCGGGCCacgucgGGCUGCUGCCGc -3'
miRNA:   3'- aC-GGGCGUCCGGca----CCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 76614 0.69 0.334256
Target:  5'- -cCUCGCAGGCgGcGGCUGCgGCCGc -3'
miRNA:   3'- acGGGCGUCCGgCaCCGGCGgCGGUa -5'
1706 3' -67.3 NC_001347.2 + 73717 0.69 0.3074
Target:  5'- gGUCCGCGGGCa----CCGCCGCCGg -3'
miRNA:   3'- aCGGGCGUCCGgcaccGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 71646 0.69 0.313956
Target:  5'- cGCUaCGCAu-CCGUGGCCGCgGCCGg -3'
miRNA:   3'- aCGG-GCGUccGGCACCGGCGgCGGUa -5'
1706 3' -67.3 NC_001347.2 + 68729 0.72 0.197706
Target:  5'- cGCUCGUcggAGGCCGUGGagcgagUGCCGCCGc -3'
miRNA:   3'- aCGGGCG---UCCGGCACCg-----GCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 67634 0.68 0.362789
Target:  5'- gUGUCCaGCGgcagcgacaugcGGCCGcuGCCGCCGCCAc -3'
miRNA:   3'- -ACGGG-CGU------------CCGGCacCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 67398 0.69 0.3074
Target:  5'- cGCCCGC--GCUGUGGgCGCUGCUg- -3'
miRNA:   3'- aCGGGCGucCGGCACCgGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 67351 0.73 0.168219
Target:  5'- -cCCCGCAGccgccGCCGUcGCCGCCGCCu- -3'
miRNA:   3'- acGGGCGUC-----CGGCAcCGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 65882 0.76 0.109752
Target:  5'- cGCUgGCGGGCCGaccGCCGCCGCCc- -3'
miRNA:   3'- aCGGgCGUCCGGCac-CGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 63092 0.72 0.21651
Target:  5'- gGCUCgGCAagugccGCCGUGGCCGCCGCgGc -3'
miRNA:   3'- aCGGG-CGUc-----CGGCACCGGCGGCGgUa -5'
1706 3' -67.3 NC_001347.2 + 39354 0.67 0.436208
Target:  5'- gGCCCGCggGGuucuacccgguggacGCCGUGGCCcggcGUCGUCGUa -3'
miRNA:   3'- aCGGGCG--UC---------------CGGCACCGG----CGGCGGUA- -5'
1706 3' -67.3 NC_001347.2 + 38069 0.66 0.449537
Target:  5'- cGCCCGCGcGCagaaaGUGcgacagcuCCGCCGCCAg -3'
miRNA:   3'- aCGGGCGUcCGg----CACc-------GGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 37068 0.69 0.294604
Target:  5'- gUGCUgGC-GGCCGUGGCCuGUgGCCc- -3'
miRNA:   3'- -ACGGgCGuCCGGCACCGG-CGgCGGua -5'
1706 3' -67.3 NC_001347.2 + 31674 0.66 0.483807
Target:  5'- gGUCgGCuGGUCG-GGCCGUCGCgGa -3'
miRNA:   3'- aCGGgCGuCCGGCaCCGGCGGCGgUa -5'
1706 3' -67.3 NC_001347.2 + 17119 0.72 0.21651
Target:  5'- aUGCCgguCGUccGCCGUcGGCCGCCGCCc- -3'
miRNA:   3'- -ACGG---GCGucCGGCA-CCGGCGGCGGua -5'
1706 3' -67.3 NC_001347.2 + 13521 0.66 0.457981
Target:  5'- -aCCCGcCGGGCgGcccgGGCCGCCGUg-- -3'
miRNA:   3'- acGGGC-GUCCGgCa---CCGGCGGCGgua -5'
1706 3' -67.3 NC_001347.2 + 2394 0.73 0.184552
Target:  5'- cGCCCGCcgccgAGGCCGcgcggcGGCUGCUGCCc- -3'
miRNA:   3'- aCGGGCG-----UCCGGCa-----CCGGCGGCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.