miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1706 3' -67.3 NC_001347.2 + 31674 0.66 0.483807
Target:  5'- gGUCgGCuGGUCG-GGCCGUCGCgGa -3'
miRNA:   3'- aCGGgCGuCCGGCaCCGGCGGCGgUa -5'
1706 3' -67.3 NC_001347.2 + 96907 0.66 0.466509
Target:  5'- aGUCgGCuaacaaAGcCCG-GGCCGCCGCCAg -3'
miRNA:   3'- aCGGgCG------UCcGGCaCCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 13521 0.66 0.457981
Target:  5'- -aCCCGcCGGGCgGcccgGGCCGCCGUg-- -3'
miRNA:   3'- acGGGC-GUCCGgCa---CCGGCGGCGgua -5'
1706 3' -67.3 NC_001347.2 + 118531 0.66 0.483807
Target:  5'- gGCCCucggcguacuGCAGGCUGUgGGUgGCgUGCCAc -3'
miRNA:   3'- aCGGG----------CGUCCGGCA-CCGgCG-GCGGUa -5'
1706 3' -67.3 NC_001347.2 + 2084 0.66 0.49257
Target:  5'- gUGCcuCCGCA-GCCGUacGG-CGCCGCCGg -3'
miRNA:   3'- -ACG--GGCGUcCGGCA--CCgGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 1932 0.67 0.432912
Target:  5'- cUGCCCGCGcgguGGCUG-GGCUGCgCGgCGg -3'
miRNA:   3'- -ACGGGCGU----CCGGCaCCGGCG-GCgGUa -5'
1706 3' -67.3 NC_001347.2 + 185343 0.67 0.424734
Target:  5'- gGUCCGUGcGaGCa--GGCCGCCGCCGUg -3'
miRNA:   3'- aCGGGCGU-C-CGgcaCCGGCGGCGGUA- -5'
1706 3' -67.3 NC_001347.2 + 187349 0.68 0.377677
Target:  5'- gUGCgUUGCGuGGCCGUGGCgCGUCGCgGc -3'
miRNA:   3'- -ACG-GGCGU-CCGGCACCG-GCGGCGgUa -5'
1706 3' -67.3 NC_001347.2 + 84617 0.68 0.377677
Target:  5'- aGCCgucgugGguGGCCucgcgGUGGCUGCCGCUAc -3'
miRNA:   3'- aCGGg-----CguCCGG-----CACCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 195665 0.67 0.39297
Target:  5'- cGCCCG-AGGaUC-UGGCgGCCGCCGg -3'
miRNA:   3'- aCGGGCgUCC-GGcACCGgCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 79866 0.67 0.399981
Target:  5'- gGCCCGUGGGCCuG-GGCCuGCuagacgugcucaaCGCCAa -3'
miRNA:   3'- aCGGGCGUCCGG-CaCCGG-CG-------------GCGGUa -5'
1706 3' -67.3 NC_001347.2 + 88332 0.67 0.400765
Target:  5'- gGCagCGCAaGCCGUGGuaaCCGUCGCCGc -3'
miRNA:   3'- aCGg-GCGUcCGGCACC---GGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 156677 0.67 0.400765
Target:  5'- aUGgCgGCGGGUCGUGGCgGCUGUg-- -3'
miRNA:   3'- -ACgGgCGUCCGGCACCGgCGGCGgua -5'
1706 3' -67.3 NC_001347.2 + 196551 0.67 0.400765
Target:  5'- -cCCCGCGGGCUG-GGCCugUGCCAa -3'
miRNA:   3'- acGGGCGUCCGGCaCCGGcgGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 196950 0.67 0.408659
Target:  5'- cUGCgCCG-GGGCUGUcGCgCGCCGCCGa -3'
miRNA:   3'- -ACG-GGCgUCCGGCAcCG-GCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 87583 0.67 0.416649
Target:  5'- aGCCCGU-GGCCGUGaGCaGaCCGCgGUg -3'
miRNA:   3'- aCGGGCGuCCGGCAC-CGgC-GGCGgUA- -5'
1706 3' -67.3 NC_001347.2 + 222751 0.67 0.416649
Target:  5'- cGCugCCGC-GGCCauuGCCGCCGCCGc -3'
miRNA:   3'- aCG--GGCGuCCGGcacCGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 1065 0.67 0.416649
Target:  5'- -cCCCGCGGGCCGccGGgCGCC-CCu- -3'
miRNA:   3'- acGGGCGUCCGGCa-CCgGCGGcGGua -5'
1706 3' -67.3 NC_001347.2 + 89677 0.67 0.424734
Target:  5'- cGCUCGUcucgaccgcacaAGcGCCGgccccGCCGCCGCCAc -3'
miRNA:   3'- aCGGGCG------------UC-CGGCac---CGGCGGCGGUa -5'
1706 3' -67.3 NC_001347.2 + 136485 0.67 0.424734
Target:  5'- -uCCCGCGGGCCcUGGCCcGCgcaugCGCCc- -3'
miRNA:   3'- acGGGCGUCCGGcACCGG-CG-----GCGGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.