miRNA: 3'- acGGGCGUCCGGCa-CCgGCGGcGGua -5'
miRNA: 3'- aCGGGCG------------UC-CGGCac---CGGCGGCGGUa -5'
miRNA: 3'- -ACGGGC----GUCcGGCACCGGCgGCGGUA- -5'
Results 61 - 63 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1706 | 3' | -67.3 | NC_001347.2 | + | 1065 | 0.67 | 0.416649 |
|
Target: 5'- -cCCCGCGGGCCGccGGgCGCC-CCu- -3' miRNA: 3'- acGGGCGUCCGGCa-CCgGCGGcGGua -5' |
|||||||
| 1706 | 3' | -67.3 | NC_001347.2 | + | 89677 | 0.67 | 0.424734 |
|
Target: 5'- cGCUCGUcucgaccgcacaAGcGCCGgccccGCCGCCGCCAc -3' miRNA: 3'- aCGGGCG------------UC-CGGCac---CGGCGGCGGUa -5' |
|||||||
| 1706 | 3' | -67.3 | NC_001347.2 | + | 149432 | 0.66 | 0.49257 |
|
Target: 5'- gUGCCCGacgaCAGcUCGUGGCCG-CGCUAUc -3' miRNA: 3'- -ACGGGC----GUCcGGCACCGGCgGCGGUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home