miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1706 5' -50.9 NC_001347.2 + 166017 0.66 0.998999
Target:  5'- cGGAcGUCGCGCC---UGCCGU-UGAu -3'
miRNA:   3'- -CCUaUAGCGUGGcuaACGGCGuACUc -5'
1706 5' -50.9 NC_001347.2 + 184293 0.66 0.998999
Target:  5'- aGGAa--UGCugCGGUUGCCuuGCAgGAGg -3'
miRNA:   3'- -CCUauaGCGugGCUAACGG--CGUaCUC- -5'
1706 5' -50.9 NC_001347.2 + 112623 0.66 0.998999
Target:  5'- cGGAgaGUCGCGCCGAcgguaauagGCCG-GUGAu -3'
miRNA:   3'- -CCUa-UAGCGUGGCUaa-------CGGCgUACUc -5'
1706 5' -50.9 NC_001347.2 + 208100 0.66 0.998999
Target:  5'- aGAUGggCGCACCGAcggcggaGCCGCGUc-- -3'
miRNA:   3'- cCUAUa-GCGUGGCUaa-----CGGCGUAcuc -5'
1706 5' -50.9 NC_001347.2 + 34306 0.66 0.998789
Target:  5'- cGGUGUCGcCACCGuugacguggGCgGCgAUGAGa -3'
miRNA:   3'- cCUAUAGC-GUGGCuaa------CGgCG-UACUC- -5'
1706 5' -50.9 NC_001347.2 + 191325 0.66 0.998789
Target:  5'- ---gAUCuGCACCGccugcgacUGCCGCAUGGu -3'
miRNA:   3'- ccuaUAG-CGUGGCua------ACGGCGUACUc -5'
1706 5' -50.9 NC_001347.2 + 27467 0.66 0.998542
Target:  5'- uGGAUAgcUUGCACCGGc-GCUGuCAUGGu -3'
miRNA:   3'- -CCUAU--AGCGUGGCUaaCGGC-GUACUc -5'
1706 5' -50.9 NC_001347.2 + 154684 0.67 0.99709
Target:  5'- uGAUGagGUGCUGAgcGCCGCAcGGGg -3'
miRNA:   3'- cCUAUagCGUGGCUaaCGGCGUaCUC- -5'
1706 5' -50.9 NC_001347.2 + 115637 0.67 0.99709
Target:  5'- ---gGUCGCGCCGAUcGCUGUAg--- -3'
miRNA:   3'- ccuaUAGCGUGGCUAaCGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 138770 0.67 0.996582
Target:  5'- uGGG-AUCGUugCGGUUGUCGCcuuUGGu -3'
miRNA:   3'- -CCUaUAGCGugGCUAACGGCGu--ACUc -5'
1706 5' -50.9 NC_001347.2 + 192619 0.67 0.996003
Target:  5'- uGAUA-CGCGCCGGcaGCUGCAgcacgugGAGa -3'
miRNA:   3'- cCUAUaGCGUGGCUaaCGGCGUa------CUC- -5'
1706 5' -50.9 NC_001347.2 + 160816 0.67 0.995345
Target:  5'- -cGUGUgGCuCUGA-UGCUGCGUGAGg -3'
miRNA:   3'- ccUAUAgCGuGGCUaACGGCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 172021 0.67 0.995345
Target:  5'- ---aAUUGUAUCGGUUGCCGCGg--- -3'
miRNA:   3'- ccuaUAGCGUGGCUAACGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 155 0.68 0.993767
Target:  5'- cGGGUguGUCGUGCCGGgugUGUCGCGg--- -3'
miRNA:   3'- -CCUA--UAGCGUGGCUa--ACGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 229634 0.68 0.993767
Target:  5'- cGGGUguGUCGUGCCGGgugUGUCGCGg--- -3'
miRNA:   3'- -CCUA--UAGCGUGGCUa--ACGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 190143 0.68 0.991784
Target:  5'- cGGGgc-CGCaACCGGguucUGCCGgCAUGGGg -3'
miRNA:   3'- -CCUauaGCG-UGGCUa---ACGGC-GUACUC- -5'
1706 5' -50.9 NC_001347.2 + 192721 0.68 0.990743
Target:  5'- cGGGcucUCGCGCCGucaacagcgugccuuUUGCCGCGcGAGu -3'
miRNA:   3'- -CCUau-AGCGUGGCu--------------AACGGCGUaCUC- -5'
1706 5' -50.9 NC_001347.2 + 81498 0.68 0.990621
Target:  5'- cGGGUG-CGCACCGccggUGCUGCugcUGAc -3'
miRNA:   3'- -CCUAUaGCGUGGCua--ACGGCGu--ACUc -5'
1706 5' -50.9 NC_001347.2 + 197041 0.68 0.989332
Target:  5'- aGGA--UCGCACgCGGcUGCCGCAg--- -3'
miRNA:   3'- -CCUauAGCGUG-GCUaACGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 153208 0.69 0.986345
Target:  5'- aGAUGUCGUGCaGGUcgUGCaGCGUGAGg -3'
miRNA:   3'- cCUAUAGCGUGgCUA--ACGgCGUACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.