miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1706 5' -50.9 NC_001347.2 + 92293 1.12 0.008614
Target:  5'- gGGAUAUCGCACCGAUUGCCGCAUGAGg -3'
miRNA:   3'- -CCUAUAGCGUGGCUAACGGCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 222441 0.77 0.763769
Target:  5'- ---cGUCGagGCCGAUcgacUGCCGCAUGAGa -3'
miRNA:   3'- ccuaUAGCg-UGGCUA----ACGGCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 114182 0.76 0.782583
Target:  5'- aGAUGUCGCGCgGAcaGCCGC-UGAGc -3'
miRNA:   3'- cCUAUAGCGUGgCUaaCGGCGuACUC- -5'
1706 5' -50.9 NC_001347.2 + 87072 0.76 0.791789
Target:  5'- -----cCGCGCCGGUccaacaGCCGCAUGAGg -3'
miRNA:   3'- ccuauaGCGUGGCUAa-----CGGCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 191148 0.73 0.914095
Target:  5'- ---cGUCGCGCCa--UGCCGCGUGAc -3'
miRNA:   3'- ccuaUAGCGUGGcuaACGGCGUACUc -5'
1706 5' -50.9 NC_001347.2 + 149053 0.7 0.967712
Target:  5'- uGAguacagCGaCACCGAUagGCUGCGUGAGg -3'
miRNA:   3'- cCUaua---GC-GUGGCUAa-CGGCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 168115 0.7 0.976089
Target:  5'- cGGUGUCGCGCCGAaacaacacGUaggGCAUGAGc -3'
miRNA:   3'- cCUAUAGCGUGGCUaa------CGg--CGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 108293 0.69 0.984628
Target:  5'- ---aGUCGCggcgauacGCCGGUgcUGCCGCAcGAGa -3'
miRNA:   3'- ccuaUAGCG--------UGGCUA--ACGGCGUaCUC- -5'
1706 5' -50.9 NC_001347.2 + 153208 0.69 0.986345
Target:  5'- aGAUGUCGUGCaGGUcgUGCaGCGUGAGg -3'
miRNA:   3'- cCUAUAGCGUGgCUA--ACGgCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 197041 0.68 0.989332
Target:  5'- aGGA--UCGCACgCGGcUGCCGCAg--- -3'
miRNA:   3'- -CCUauAGCGUG-GCUaACGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 81498 0.68 0.990621
Target:  5'- cGGGUG-CGCACCGccggUGCUGCugcUGAc -3'
miRNA:   3'- -CCUAUaGCGUGGCua--ACGGCGu--ACUc -5'
1706 5' -50.9 NC_001347.2 + 192721 0.68 0.990743
Target:  5'- cGGGcucUCGCGCCGucaacagcgugccuuUUGCCGCGcGAGu -3'
miRNA:   3'- -CCUau-AGCGUGGCu--------------AACGGCGUaCUC- -5'
1706 5' -50.9 NC_001347.2 + 190143 0.68 0.991784
Target:  5'- cGGGgc-CGCaACCGGguucUGCCGgCAUGGGg -3'
miRNA:   3'- -CCUauaGCG-UGGCUa---ACGGC-GUACUC- -5'
1706 5' -50.9 NC_001347.2 + 229634 0.68 0.993767
Target:  5'- cGGGUguGUCGUGCCGGgugUGUCGCGg--- -3'
miRNA:   3'- -CCUA--UAGCGUGGCUa--ACGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 155 0.68 0.993767
Target:  5'- cGGGUguGUCGUGCCGGgugUGUCGCGg--- -3'
miRNA:   3'- -CCUA--UAGCGUGGCUa--ACGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 172021 0.67 0.995345
Target:  5'- ---aAUUGUAUCGGUUGCCGCGg--- -3'
miRNA:   3'- ccuaUAGCGUGGCUAACGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 160816 0.67 0.995345
Target:  5'- -cGUGUgGCuCUGA-UGCUGCGUGAGg -3'
miRNA:   3'- ccUAUAgCGuGGCUaACGGCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 192619 0.67 0.996003
Target:  5'- uGAUA-CGCGCCGGcaGCUGCAgcacgugGAGa -3'
miRNA:   3'- cCUAUaGCGUGGCUaaCGGCGUa------CUC- -5'
1706 5' -50.9 NC_001347.2 + 138770 0.67 0.996582
Target:  5'- uGGG-AUCGUugCGGUUGUCGCcuuUGGu -3'
miRNA:   3'- -CCUaUAGCGugGCUAACGGCGu--ACUc -5'
1706 5' -50.9 NC_001347.2 + 115637 0.67 0.99709
Target:  5'- ---gGUCGCGCCGAUcGCUGUAg--- -3'
miRNA:   3'- ccuaUAGCGUGGCUAaCGGCGUacuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.