miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1706 5' -50.9 NC_001347.2 + 155 0.68 0.993767
Target:  5'- cGGGUguGUCGUGCCGGgugUGUCGCGg--- -3'
miRNA:   3'- -CCUA--UAGCGUGGCUa--ACGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 27467 0.66 0.998542
Target:  5'- uGGAUAgcUUGCACCGGc-GCUGuCAUGGu -3'
miRNA:   3'- -CCUAU--AGCGUGGCUaaCGGC-GUACUc -5'
1706 5' -50.9 NC_001347.2 + 34306 0.66 0.998789
Target:  5'- cGGUGUCGcCACCGuugacguggGCgGCgAUGAGa -3'
miRNA:   3'- cCUAUAGC-GUGGCuaa------CGgCG-UACUC- -5'
1706 5' -50.9 NC_001347.2 + 81498 0.68 0.990621
Target:  5'- cGGGUG-CGCACCGccggUGCUGCugcUGAc -3'
miRNA:   3'- -CCUAUaGCGUGGCua--ACGGCGu--ACUc -5'
1706 5' -50.9 NC_001347.2 + 87072 0.76 0.791789
Target:  5'- -----cCGCGCCGGUccaacaGCCGCAUGAGg -3'
miRNA:   3'- ccuauaGCGUGGCUAa-----CGGCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 92293 1.12 0.008614
Target:  5'- gGGAUAUCGCACCGAUUGCCGCAUGAGg -3'
miRNA:   3'- -CCUAUAGCGUGGCUAACGGCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 108293 0.69 0.984628
Target:  5'- ---aGUCGCggcgauacGCCGGUgcUGCCGCAcGAGa -3'
miRNA:   3'- ccuaUAGCG--------UGGCUA--ACGGCGUaCUC- -5'
1706 5' -50.9 NC_001347.2 + 112623 0.66 0.998999
Target:  5'- cGGAgaGUCGCGCCGAcgguaauagGCCG-GUGAu -3'
miRNA:   3'- -CCUa-UAGCGUGGCUaa-------CGGCgUACUc -5'
1706 5' -50.9 NC_001347.2 + 114182 0.76 0.782583
Target:  5'- aGAUGUCGCGCgGAcaGCCGC-UGAGc -3'
miRNA:   3'- cCUAUAGCGUGgCUaaCGGCGuACUC- -5'
1706 5' -50.9 NC_001347.2 + 115637 0.67 0.99709
Target:  5'- ---gGUCGCGCCGAUcGCUGUAg--- -3'
miRNA:   3'- ccuaUAGCGUGGCUAaCGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 138770 0.67 0.996582
Target:  5'- uGGG-AUCGUugCGGUUGUCGCcuuUGGu -3'
miRNA:   3'- -CCUaUAGCGugGCUAACGGCGu--ACUc -5'
1706 5' -50.9 NC_001347.2 + 149053 0.7 0.967712
Target:  5'- uGAguacagCGaCACCGAUagGCUGCGUGAGg -3'
miRNA:   3'- cCUaua---GC-GUGGCUAa-CGGCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 153208 0.69 0.986345
Target:  5'- aGAUGUCGUGCaGGUcgUGCaGCGUGAGg -3'
miRNA:   3'- cCUAUAGCGUGgCUA--ACGgCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 154684 0.67 0.99709
Target:  5'- uGAUGagGUGCUGAgcGCCGCAcGGGg -3'
miRNA:   3'- cCUAUagCGUGGCUaaCGGCGUaCUC- -5'
1706 5' -50.9 NC_001347.2 + 160816 0.67 0.995345
Target:  5'- -cGUGUgGCuCUGA-UGCUGCGUGAGg -3'
miRNA:   3'- ccUAUAgCGuGGCUaACGGCGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 166017 0.66 0.998999
Target:  5'- cGGAcGUCGCGCC---UGCCGU-UGAu -3'
miRNA:   3'- -CCUaUAGCGUGGcuaACGGCGuACUc -5'
1706 5' -50.9 NC_001347.2 + 168115 0.7 0.976089
Target:  5'- cGGUGUCGCGCCGAaacaacacGUaggGCAUGAGc -3'
miRNA:   3'- cCUAUAGCGUGGCUaa------CGg--CGUACUC- -5'
1706 5' -50.9 NC_001347.2 + 172021 0.67 0.995345
Target:  5'- ---aAUUGUAUCGGUUGCCGCGg--- -3'
miRNA:   3'- ccuaUAGCGUGGCUAACGGCGUacuc -5'
1706 5' -50.9 NC_001347.2 + 184293 0.66 0.998999
Target:  5'- aGGAa--UGCugCGGUUGCCuuGCAgGAGg -3'
miRNA:   3'- -CCUauaGCGugGCUAACGG--CGUaCUC- -5'
1706 5' -50.9 NC_001347.2 + 190143 0.68 0.991784
Target:  5'- cGGGgc-CGCaACCGGguucUGCCGgCAUGGGg -3'
miRNA:   3'- -CCUauaGCG-UGGCUa---ACGGC-GUACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.