Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1706 | 5' | -50.9 | NC_001347.2 | + | 191148 | 0.73 | 0.914095 |
Target: 5'- ---cGUCGCGCCa--UGCCGCGUGAc -3' miRNA: 3'- ccuaUAGCGUGGcuaACGGCGUACUc -5' |
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1706 | 5' | -50.9 | NC_001347.2 | + | 191325 | 0.66 | 0.998789 |
Target: 5'- ---gAUCuGCACCGccugcgacUGCCGCAUGGu -3' miRNA: 3'- ccuaUAG-CGUGGCua------ACGGCGUACUc -5' |
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1706 | 5' | -50.9 | NC_001347.2 | + | 192619 | 0.67 | 0.996003 |
Target: 5'- uGAUA-CGCGCCGGcaGCUGCAgcacgugGAGa -3' miRNA: 3'- cCUAUaGCGUGGCUaaCGGCGUa------CUC- -5' |
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1706 | 5' | -50.9 | NC_001347.2 | + | 192721 | 0.68 | 0.990743 |
Target: 5'- cGGGcucUCGCGCCGucaacagcgugccuuUUGCCGCGcGAGu -3' miRNA: 3'- -CCUau-AGCGUGGCu--------------AACGGCGUaCUC- -5' |
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1706 | 5' | -50.9 | NC_001347.2 | + | 197041 | 0.68 | 0.989332 |
Target: 5'- aGGA--UCGCACgCGGcUGCCGCAg--- -3' miRNA: 3'- -CCUauAGCGUG-GCUaACGGCGUacuc -5' |
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1706 | 5' | -50.9 | NC_001347.2 | + | 208100 | 0.66 | 0.998999 |
Target: 5'- aGAUGggCGCACCGAcggcggaGCCGCGUc-- -3' miRNA: 3'- cCUAUa-GCGUGGCUaa-----CGGCGUAcuc -5' |
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1706 | 5' | -50.9 | NC_001347.2 | + | 222441 | 0.77 | 0.763769 |
Target: 5'- ---cGUCGagGCCGAUcgacUGCCGCAUGAGa -3' miRNA: 3'- ccuaUAGCg-UGGCUA----ACGGCGUACUC- -5' |
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1706 | 5' | -50.9 | NC_001347.2 | + | 229634 | 0.68 | 0.993767 |
Target: 5'- cGGGUguGUCGUGCCGGgugUGUCGCGg--- -3' miRNA: 3'- -CCUA--UAGCGUGGCUa--ACGGCGUacuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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