miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17060 3' -50.9 NC_004333.2 + 12656 0.66 0.868855
Target:  5'- aUUGCcauuuGAUCGACGgGUCGAcCGCg--- -3'
miRNA:   3'- -AACG-----CUAGCUGUgCAGCUaGCGaaug -5'
17060 3' -50.9 NC_004333.2 + 31468 0.67 0.842644
Target:  5'- -cGCGaAUCuGCuuGUCGAUCGCUUu- -3'
miRNA:   3'- aaCGC-UAGcUGugCAGCUAGCGAAug -5'
17060 3' -50.9 NC_004333.2 + 30859 0.67 0.842644
Target:  5'- -cGCGAUCagaucauccucgGGCAUGUCGAggaCGC-UGCg -3'
miRNA:   3'- aaCGCUAG------------CUGUGCAGCUa--GCGaAUG- -5'
17060 3' -50.9 NC_004333.2 + 14097 0.67 0.833409
Target:  5'- -cGCGAUCGuCAugcCGUCGA-CGCUa-- -3'
miRNA:   3'- aaCGCUAGCuGU---GCAGCUaGCGAaug -5'
17060 3' -50.9 NC_004333.2 + 5964 0.67 0.833409
Target:  5'- gUGCGGUCGAa--GUCGAgcCGCagGCa -3'
miRNA:   3'- aACGCUAGCUgugCAGCUa-GCGaaUG- -5'
17060 3' -50.9 NC_004333.2 + 40940 0.67 0.823942
Target:  5'- -cGCGA-CGcCACaGUCGGUCGCacgGCa -3'
miRNA:   3'- aaCGCUaGCuGUG-CAGCUAGCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 20232 0.67 0.814254
Target:  5'- -gGCGAUCGAcCGCGacuggccuaCGAUCGCgccGCa -3'
miRNA:   3'- aaCGCUAGCU-GUGCa--------GCUAGCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 28965 0.67 0.814254
Target:  5'- -cGCGGUCGaACGCGgCGAUCagUUGCg -3'
miRNA:   3'- aaCGCUAGC-UGUGCaGCUAGcgAAUG- -5'
17060 3' -50.9 NC_004333.2 + 41408 0.68 0.783981
Target:  5'- aUGCGAUCGGCuACcUCGAggCGCgcgACc -3'
miRNA:   3'- aACGCUAGCUG-UGcAGCUa-GCGaa-UG- -5'
17060 3' -50.9 NC_004333.2 + 9873 0.68 0.783981
Target:  5'- -cGcCGGUCGcCGCGUgcaCGGUCGCgcgUGCa -3'
miRNA:   3'- aaC-GCUAGCuGUGCA---GCUAGCGa--AUG- -5'
17060 3' -50.9 NC_004333.2 + 32367 0.68 0.773527
Target:  5'- gUGCGcaggcGUCGGCGCGaUCGAaCGCUUc- -3'
miRNA:   3'- aACGC-----UAGCUGUGC-AGCUaGCGAAug -5'
17060 3' -50.9 NC_004333.2 + 17952 0.69 0.752153
Target:  5'- -cGCGcgCGGCGCG-CGAUCGaucagGCa -3'
miRNA:   3'- aaCGCuaGCUGUGCaGCUAGCgaa--UG- -5'
17060 3' -50.9 NC_004333.2 + 24587 0.69 0.752153
Target:  5'- -cGUGAUCGACuCGcCGGUCGgaUUUGCg -3'
miRNA:   3'- aaCGCUAGCUGuGCaGCUAGC--GAAUG- -5'
17060 3' -50.9 NC_004333.2 + 11955 0.69 0.748898
Target:  5'- -gGCGGUCGagcgccuugcacGCGCGUCGAcgaucgcggccguaUCGCggUGCa -3'
miRNA:   3'- aaCGCUAGC------------UGUGCAGCU--------------AGCGa-AUG- -5'
17060 3' -50.9 NC_004333.2 + 19301 0.69 0.741258
Target:  5'- -cGCGAUCG-CGCGgcaCGAgCGCUUGa -3'
miRNA:   3'- aaCGCUAGCuGUGCa--GCUaGCGAAUg -5'
17060 3' -50.9 NC_004333.2 + 16110 0.69 0.741258
Target:  5'- aUGCGAUCGuCGCGUCGGacacguucuuUcCGCUgACc -3'
miRNA:   3'- aACGCUAGCuGUGCAGCU----------A-GCGAaUG- -5'
17060 3' -50.9 NC_004333.2 + 30229 0.69 0.741258
Target:  5'- --uCGAUCGACGCGcCGcgCGCgaucagUGCg -3'
miRNA:   3'- aacGCUAGCUGUGCaGCuaGCGa-----AUG- -5'
17060 3' -50.9 NC_004333.2 + 43322 0.69 0.730243
Target:  5'- -aGCGGcaUCGGCACGgCGcgCGCgUACg -3'
miRNA:   3'- aaCGCU--AGCUGUGCaGCuaGCGaAUG- -5'
17060 3' -50.9 NC_004333.2 + 20557 0.7 0.696603
Target:  5'- -cGCGccgcugaucGUCGGCGCGUCgGGUCGCg--- -3'
miRNA:   3'- aaCGC---------UAGCUGUGCAG-CUAGCGaaug -5'
17060 3' -50.9 NC_004333.2 + 38988 0.7 0.673813
Target:  5'- -cGCGAUCGACACuGcCG-UCGCgaACg -3'
miRNA:   3'- aaCGCUAGCUGUG-CaGCuAGCGaaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.