miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17060 5' -54.8 NC_004333.2 + 19779 0.66 0.728789
Target:  5'- aACGCAcgGGAUCGUGccGCGcGUUGa--- -3'
miRNA:   3'- -UGCGUuaCCUAGCGC--CGC-CAGCaagu -5'
17060 5' -54.8 NC_004333.2 + 10111 0.66 0.728789
Target:  5'- gACGCGAUucGGAUCGaGGCccaGGUCGg--- -3'
miRNA:   3'- -UGCGUUA--CCUAGCgCCG---CCAGCaagu -5'
17060 5' -54.8 NC_004333.2 + 23860 0.66 0.727717
Target:  5'- gGCGCAuucucgGUcGGUCGCGGCuguuccaGGUCGcgCAg -3'
miRNA:   3'- -UGCGU------UAcCUAGCGCCG-------CCAGCaaGU- -5'
17060 5' -54.8 NC_004333.2 + 45549 0.66 0.707179
Target:  5'- aGCGCGAUGaaccgCGCGGuCGGUCugUCGc -3'
miRNA:   3'- -UGCGUUACcua--GCGCC-GCCAGcaAGU- -5'
17060 5' -54.8 NC_004333.2 + 1144 0.66 0.685268
Target:  5'- cGCGCGAcguUGcacugcauauccGAUCGCGGCGGcUUGcUUCGg -3'
miRNA:   3'- -UGCGUU---AC------------CUAGCGCCGCC-AGC-AAGU- -5'
17060 5' -54.8 NC_004333.2 + 39235 0.66 0.673123
Target:  5'- cACGCGAUGGAcagCGcCGGCGcgaacgaagccgcGUCGcgCAu -3'
miRNA:   3'- -UGCGUUACCUa--GC-GCCGC-------------CAGCaaGU- -5'
17060 5' -54.8 NC_004333.2 + 9290 0.67 0.629775
Target:  5'- aGCGCGAagcggcgcGGGUgCGCGGaCGGgcggCGUUCGu -3'
miRNA:   3'- -UGCGUUa-------CCUA-GCGCC-GCCa---GCAAGU- -5'
17060 5' -54.8 NC_004333.2 + 8965 0.67 0.616414
Target:  5'- uGCGCGGgcUGGAUcgugggccgugCGCGGCGGcgaccgacgcggCGUUCGc -3'
miRNA:   3'- -UGCGUU--ACCUA-----------GCGCCGCCa-----------GCAAGU- -5'
17060 5' -54.8 NC_004333.2 + 40012 0.68 0.607518
Target:  5'- uACGCGAUGGA-CGCGGCcgaccuGUCGc--- -3'
miRNA:   3'- -UGCGUUACCUaGCGCCGc-----CAGCaagu -5'
17060 5' -54.8 NC_004333.2 + 10082 0.68 0.585348
Target:  5'- aGCuCGGUcGGAUCGCGGUacaGGUCGUa-- -3'
miRNA:   3'- -UGcGUUA-CCUAGCGCCG---CCAGCAagu -5'
17060 5' -54.8 NC_004333.2 + 28775 0.69 0.530767
Target:  5'- cGCGC---GGGUCGCGGCGGcgCGa--- -3'
miRNA:   3'- -UGCGuuaCCUAGCGCCGCCa-GCaagu -5'
17060 5' -54.8 NC_004333.2 + 19391 0.7 0.45481
Target:  5'- uACGCGAUGGGaagUCGCGccgccgcgacccgcGCGGUCGa--- -3'
miRNA:   3'- -UGCGUUACCU---AGCGC--------------CGCCAGCaagu -5'
17060 5' -54.8 NC_004333.2 + 21450 0.71 0.40351
Target:  5'- gACGCAAUGGGUcaaguuccuggccggCGCGGCGGgcaUCGa--- -3'
miRNA:   3'- -UGCGUUACCUA---------------GCGCCGCC---AGCaagu -5'
17060 5' -54.8 NC_004333.2 + 15489 0.71 0.390582
Target:  5'- aGCGCAAcaGGGcugcUCGCGGCGGUCa---- -3'
miRNA:   3'- -UGCGUUa-CCU----AGCGCCGCCAGcaagu -5'
17060 5' -54.8 NC_004333.2 + 19768 0.72 0.372589
Target:  5'- gGCGCGAcacguUGcGAUUGCGGCGGUUauugGUUCc -3'
miRNA:   3'- -UGCGUU-----AC-CUAGCGCCGCCAG----CAAGu -5'
17060 5' -54.8 NC_004333.2 + 20692 1.08 0.001061
Target:  5'- cACGCAAUGGAUCGCGGCGGUCGUUCAg -3'
miRNA:   3'- -UGCGUUACCUAGCGCCGCCAGCAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.