miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17061 5' -48.6 NC_004333.2 + 30145 0.66 0.968494
Target:  5'- aGCGCGAUcagCGCGUagaACUCGgccggcuuCGUCGGc -3'
miRNA:   3'- -CGUGCUA---GCGUA---UGAGCau------GUAGCUa -5'
17061 5' -48.6 NC_004333.2 + 46824 0.66 0.968494
Target:  5'- aCACGAaCGU--GCUCG-GCAUCGAa -3'
miRNA:   3'- cGUGCUaGCGuaUGAGCaUGUAGCUa -5'
17061 5' -48.6 NC_004333.2 + 8002 0.66 0.968494
Target:  5'- cGgAUGAUCGCccAUGCUUccGCAUCGGa -3'
miRNA:   3'- -CgUGCUAGCG--UAUGAGcaUGUAGCUa -5'
17061 5' -48.6 NC_004333.2 + 36904 0.66 0.96491
Target:  5'- cGCGCGGcaaCGCGaACUCGgccGCAUUGGg -3'
miRNA:   3'- -CGUGCUa--GCGUaUGAGCa--UGUAGCUa -5'
17061 5' -48.6 NC_004333.2 + 37541 0.66 0.96491
Target:  5'- --cCGGUgCGC-UGCUCGUGCGUCa-- -3'
miRNA:   3'- cguGCUA-GCGuAUGAGCAUGUAGcua -5'
17061 5' -48.6 NC_004333.2 + 14095 0.66 0.956906
Target:  5'- aGCGCGAUCGuCAUGC-CGUcgacGCuAUCGu- -3'
miRNA:   3'- -CGUGCUAGC-GUAUGaGCA----UG-UAGCua -5'
17061 5' -48.6 NC_004333.2 + 8971 0.66 0.956906
Target:  5'- gGCugGAUCGUggGC-CGUGCG-CGGc -3'
miRNA:   3'- -CGugCUAGCGuaUGaGCAUGUaGCUa -5'
17061 5' -48.6 NC_004333.2 + 18806 0.66 0.956906
Target:  5'- cGCGCGGcCGCAggGCgCGUGCugcuAUCGAa -3'
miRNA:   3'- -CGUGCUaGCGUa-UGaGCAUG----UAGCUa -5'
17061 5' -48.6 NC_004333.2 + 36564 0.66 0.956042
Target:  5'- cGCGCGAagugacggccggCGCGUuucaggAUUUGUACGUCGAc -3'
miRNA:   3'- -CGUGCUa-----------GCGUA------UGAGCAUGUAGCUa -5'
17061 5' -48.6 NC_004333.2 + 23488 0.67 0.947738
Target:  5'- cGCGCgGAUCgGCAUGCa-GUugAUCGGc -3'
miRNA:   3'- -CGUG-CUAG-CGUAUGagCAugUAGCUa -5'
17061 5' -48.6 NC_004333.2 + 25935 0.67 0.942704
Target:  5'- cGCACGAUCaGC-UACUUGaACGUCu-- -3'
miRNA:   3'- -CGUGCUAG-CGuAUGAGCaUGUAGcua -5'
17061 5' -48.6 NC_004333.2 + 48021 0.67 0.942704
Target:  5'- gGCGcCGAUCGUGUGCUCGcGC--CGAa -3'
miRNA:   3'- -CGU-GCUAGCGUAUGAGCaUGuaGCUa -5'
17061 5' -48.6 NC_004333.2 + 16864 0.67 0.942704
Target:  5'- -uGCGggCGcCGUGCUCG-GCGUCGGc -3'
miRNA:   3'- cgUGCuaGC-GUAUGAGCaUGUAGCUa -5'
17061 5' -48.6 NC_004333.2 + 41773 0.68 0.91559
Target:  5'- gGCACGAcCGCAUGCgCGUGgGauucuguacucccguUCGAUg -3'
miRNA:   3'- -CGUGCUaGCGUAUGaGCAUgU---------------AGCUA- -5'
17061 5' -48.6 NC_004333.2 + 28889 0.68 0.906043
Target:  5'- cGCGCGAUCGC--GCUCGgcGCAggcCGGc -3'
miRNA:   3'- -CGUGCUAGCGuaUGAGCa-UGUa--GCUa -5'
17061 5' -48.6 NC_004333.2 + 36208 0.68 0.898859
Target:  5'- cCGCGAUCGUcgACgcugCGUGCAaggcgcUCGAc -3'
miRNA:   3'- cGUGCUAGCGuaUGa---GCAUGU------AGCUa -5'
17061 5' -48.6 NC_004333.2 + 22878 0.68 0.891375
Target:  5'- gGCGCGAUCGUAcuggcGCUCGUGa--CGAg -3'
miRNA:   3'- -CGUGCUAGCGUa----UGAGCAUguaGCUa -5'
17061 5' -48.6 NC_004333.2 + 15590 0.69 0.883597
Target:  5'- uCACGGUCGCAcgcUGCUCGUcgGUCa-- -3'
miRNA:   3'- cGUGCUAGCGU---AUGAGCAugUAGcua -5'
17061 5' -48.6 NC_004333.2 + 36411 0.69 0.883597
Target:  5'- aGUAUGGUCGCGcACUCaagGUgaACGUCGGUg -3'
miRNA:   3'- -CGUGCUAGCGUaUGAG---CA--UGUAGCUA- -5'
17061 5' -48.6 NC_004333.2 + 28790 0.69 0.874707
Target:  5'- gGCGCGAcuucccaUCGCGUAUagugCGUccACGUCGAc -3'
miRNA:   3'- -CGUGCU-------AGCGUAUGa---GCA--UGUAGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.