Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17062 | 3' | -56.1 | NC_004333.2 | + | 15519 | 0.66 | 0.620061 |
Target: 5'- gGCGGCGCGUcaagcGCGAUGUuagCGGGcAUcgaGCAg -3' miRNA: 3'- -UGUCGUGCA-----CGCUACG---GCCCuUA---CGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 31113 | 0.66 | 0.598867 |
Target: 5'- aGCGGCGCGaguugcugcucgcgcGCGAgcCCGGcGAAUGCAu -3' miRNA: 3'- -UGUCGUGCa--------------CGCUacGGCC-CUUACGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 20901 | 0.66 | 0.597754 |
Target: 5'- cGCAGCGCGUGCuacuugGCgCGcaGGAuUGCAa -3' miRNA: 3'- -UGUCGUGCACGcua---CG-GC--CCUuACGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 28492 | 0.66 | 0.585531 |
Target: 5'- cGCGGCACGcGCaaguacaaGGUGagaacuuUCGGGAGUGCGc -3' miRNA: 3'- -UGUCGUGCaCG--------CUAC-------GGCCCUUACGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 27667 | 0.66 | 0.575566 |
Target: 5'- aGCGGCGCG-GCGGcgGCCGGcagcgguUGCGc -3' miRNA: 3'- -UGUCGUGCaCGCUa-CGGCCcuu----ACGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 10070 | 0.66 | 0.575566 |
Target: 5'- gUAGCuuGUGCGAccagaUGCCGGGuaaGCc -3' miRNA: 3'- uGUCGugCACGCU-----ACGGCCCuuaCGu -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 36262 | 0.67 | 0.564541 |
Target: 5'- gGCGcGCGCGccgcUGCGcAUGCCGGGcc-GCGa -3' miRNA: 3'- -UGU-CGUGC----ACGC-UACGGCCCuuaCGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 29792 | 0.67 | 0.564541 |
Target: 5'- gACGGCACGaGCauGAUGCCGGcGAG-GUu -3' miRNA: 3'- -UGUCGUGCaCG--CUACGGCC-CUUaCGu -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 29701 | 0.67 | 0.553571 |
Target: 5'- aACGGCGgGUacgccucCGGUGCCGGGu-UGCGc -3' miRNA: 3'- -UGUCGUgCAc------GCUACGGCCCuuACGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 2453 | 0.67 | 0.542665 |
Target: 5'- uCGGCACGUuCGc-GCCGGGcucgaGAUGCAg -3' miRNA: 3'- uGUCGUGCAcGCuaCGGCCC-----UUACGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 32330 | 0.68 | 0.47898 |
Target: 5'- -gAGCGCGUGCacGGcUGCCGGGucgcUGCc -3' miRNA: 3'- ugUCGUGCACG--CU-ACGGCCCuu--ACGu -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 4882 | 0.68 | 0.468714 |
Target: 5'- uCGGCACGaGCGcauagccgGCCGGGAucgGCGc -3' miRNA: 3'- uGUCGUGCaCGCua------CGGCCCUua-CGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 17004 | 0.68 | 0.44853 |
Target: 5'- uACGGCGCGccgucugggcgGCGAUGCCaaggcGGGcggcGAUGCAu -3' miRNA: 3'- -UGUCGUGCa----------CGCUACGG-----CCC----UUACGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 29398 | 0.68 | 0.445544 |
Target: 5'- -aAGCGCGguucaGCGAUGgCGGGAaggggagccgcaacGUGCGc -3' miRNA: 3'- ugUCGUGCa----CGCUACgGCCCU--------------UACGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 8915 | 0.72 | 0.298125 |
Target: 5'- cGCGcGCGCGUGCGccUGCCGgccgcucGGggUGCGg -3' miRNA: 3'- -UGU-CGUGCACGCu-ACGGC-------CCuuACGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 44392 | 0.74 | 0.199398 |
Target: 5'- gGCGGCGCGUGCGcgguacaacggccUGCCGGGcucgcuggcuGGUGCGu -3' miRNA: 3'- -UGUCGUGCACGCu------------ACGGCCC----------UUACGU- -5' |
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17062 | 3' | -56.1 | NC_004333.2 | + | 19631 | 1.08 | 0.000722 |
Target: 5'- gACAGCACGUGCGAUGCCGGGAAUGCAc -3' miRNA: 3'- -UGUCGUGCACGCUACGGCCCUUACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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