miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17062 3' -56.1 NC_004333.2 + 15519 0.66 0.620061
Target:  5'- gGCGGCGCGUcaagcGCGAUGUuagCGGGcAUcgaGCAg -3'
miRNA:   3'- -UGUCGUGCA-----CGCUACG---GCCCuUA---CGU- -5'
17062 3' -56.1 NC_004333.2 + 31113 0.66 0.598867
Target:  5'- aGCGGCGCGaguugcugcucgcgcGCGAgcCCGGcGAAUGCAu -3'
miRNA:   3'- -UGUCGUGCa--------------CGCUacGGCC-CUUACGU- -5'
17062 3' -56.1 NC_004333.2 + 20901 0.66 0.597754
Target:  5'- cGCAGCGCGUGCuacuugGCgCGcaGGAuUGCAa -3'
miRNA:   3'- -UGUCGUGCACGcua---CG-GC--CCUuACGU- -5'
17062 3' -56.1 NC_004333.2 + 28492 0.66 0.585531
Target:  5'- cGCGGCACGcGCaaguacaaGGUGagaacuuUCGGGAGUGCGc -3'
miRNA:   3'- -UGUCGUGCaCG--------CUAC-------GGCCCUUACGU- -5'
17062 3' -56.1 NC_004333.2 + 27667 0.66 0.575566
Target:  5'- aGCGGCGCG-GCGGcgGCCGGcagcgguUGCGc -3'
miRNA:   3'- -UGUCGUGCaCGCUa-CGGCCcuu----ACGU- -5'
17062 3' -56.1 NC_004333.2 + 10070 0.66 0.575566
Target:  5'- gUAGCuuGUGCGAccagaUGCCGGGuaaGCc -3'
miRNA:   3'- uGUCGugCACGCU-----ACGGCCCuuaCGu -5'
17062 3' -56.1 NC_004333.2 + 36262 0.67 0.564541
Target:  5'- gGCGcGCGCGccgcUGCGcAUGCCGGGcc-GCGa -3'
miRNA:   3'- -UGU-CGUGC----ACGC-UACGGCCCuuaCGU- -5'
17062 3' -56.1 NC_004333.2 + 29792 0.67 0.564541
Target:  5'- gACGGCACGaGCauGAUGCCGGcGAG-GUu -3'
miRNA:   3'- -UGUCGUGCaCG--CUACGGCC-CUUaCGu -5'
17062 3' -56.1 NC_004333.2 + 29701 0.67 0.553571
Target:  5'- aACGGCGgGUacgccucCGGUGCCGGGu-UGCGc -3'
miRNA:   3'- -UGUCGUgCAc------GCUACGGCCCuuACGU- -5'
17062 3' -56.1 NC_004333.2 + 2453 0.67 0.542665
Target:  5'- uCGGCACGUuCGc-GCCGGGcucgaGAUGCAg -3'
miRNA:   3'- uGUCGUGCAcGCuaCGGCCC-----UUACGU- -5'
17062 3' -56.1 NC_004333.2 + 32330 0.68 0.47898
Target:  5'- -gAGCGCGUGCacGGcUGCCGGGucgcUGCc -3'
miRNA:   3'- ugUCGUGCACG--CU-ACGGCCCuu--ACGu -5'
17062 3' -56.1 NC_004333.2 + 4882 0.68 0.468714
Target:  5'- uCGGCACGaGCGcauagccgGCCGGGAucgGCGc -3'
miRNA:   3'- uGUCGUGCaCGCua------CGGCCCUua-CGU- -5'
17062 3' -56.1 NC_004333.2 + 17004 0.68 0.44853
Target:  5'- uACGGCGCGccgucugggcgGCGAUGCCaaggcGGGcggcGAUGCAu -3'
miRNA:   3'- -UGUCGUGCa----------CGCUACGG-----CCC----UUACGU- -5'
17062 3' -56.1 NC_004333.2 + 29398 0.68 0.445544
Target:  5'- -aAGCGCGguucaGCGAUGgCGGGAaggggagccgcaacGUGCGc -3'
miRNA:   3'- ugUCGUGCa----CGCUACgGCCCU--------------UACGU- -5'
17062 3' -56.1 NC_004333.2 + 8915 0.72 0.298125
Target:  5'- cGCGcGCGCGUGCGccUGCCGgccgcucGGggUGCGg -3'
miRNA:   3'- -UGU-CGUGCACGCu-ACGGC-------CCuuACGU- -5'
17062 3' -56.1 NC_004333.2 + 44392 0.74 0.199398
Target:  5'- gGCGGCGCGUGCGcgguacaacggccUGCCGGGcucgcuggcuGGUGCGu -3'
miRNA:   3'- -UGUCGUGCACGCu------------ACGGCCC----------UUACGU- -5'
17062 3' -56.1 NC_004333.2 + 19631 1.08 0.000722
Target:  5'- gACAGCACGUGCGAUGCCGGGAAUGCAc -3'
miRNA:   3'- -UGUCGUGCACGCUACGGCCCUUACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.