miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17063 3' -63.5 NC_004333.2 + 45882 0.65 0.317261
Target:  5'- gGCGUGCCGGCCaCGGUacacgacuugcgacGGCaaaCGCGCuGCg -3'
miRNA:   3'- -CGUGCGGCUGG-GCCG--------------CCG---GCGCGuUG- -5'
17063 3' -63.5 NC_004333.2 + 6799 0.65 0.317261
Target:  5'- aGCGCGCCGAUCuucgccugucgcaaCGGCGGCacuccgGCGg--- -3'
miRNA:   3'- -CGUGCGGCUGG--------------GCCGCCGg-----CGCguug -5'
17063 3' -63.5 NC_004333.2 + 26186 0.66 0.315036
Target:  5'- uCGCGCCGacgcaaagaaaacgGCCCGcaguGCGGgccguuugucguuuCUGCGCAACg -3'
miRNA:   3'- cGUGCGGC--------------UGGGC----CGCC--------------GGCGCGUUG- -5'
17063 3' -63.5 NC_004333.2 + 21182 0.66 0.315036
Target:  5'- cGCAgGCCGGCCugcucggggcauUacgugcgcaucaaugGGCGGCCGuCGCGcGCa -3'
miRNA:   3'- -CGUgCGGCUGG------------G---------------CCGCCGGC-GCGU-UG- -5'
17063 3' -63.5 NC_004333.2 + 35878 0.66 0.312087
Target:  5'- aGCAgaGCCGGCCCGuuGCGa-CGCGCAc- -3'
miRNA:   3'- -CGUg-CGGCUGGGC--CGCcgGCGCGUug -5'
17063 3' -63.5 NC_004333.2 + 19265 0.66 0.312087
Target:  5'- uGCACGCauccggCGACCUGGUGcuGCuCGCGagcaAGCa -3'
miRNA:   3'- -CGUGCG------GCUGGGCCGC--CG-GCGCg---UUG- -5'
17063 3' -63.5 NC_004333.2 + 46002 0.66 0.312087
Target:  5'- -gGCGCCGAgggCUGGCacGGCCuGCGCuGGCg -3'
miRNA:   3'- cgUGCGGCUg--GGCCG--CCGG-CGCG-UUG- -5'
17063 3' -63.5 NC_004333.2 + 22256 0.66 0.312087
Target:  5'- cGCGCGCaauagcuaCGugCaagcgcagGGCGGCgaaGCGCGGCg -3'
miRNA:   3'- -CGUGCG--------GCugGg-------CCGCCGg--CGCGUUG- -5'
17063 3' -63.5 NC_004333.2 + 24742 0.66 0.312087
Target:  5'- aUACGUCGACCgaucCGGCCG-GCGGCg -3'
miRNA:   3'- cGUGCGGCUGGgcc-GCCGGCgCGUUG- -5'
17063 3' -63.5 NC_004333.2 + 40350 0.66 0.312087
Target:  5'- cCGCGUCGAUCUGGCGaGCgaGCuaAACu -3'
miRNA:   3'- cGUGCGGCUGGGCCGC-CGg-CGcgUUG- -5'
17063 3' -63.5 NC_004333.2 + 12061 0.66 0.307703
Target:  5'- cGCAgGCCGucgccaaccuugcguACgUGGCuGgCGCGCAGCg -3'
miRNA:   3'- -CGUgCGGC---------------UGgGCCGcCgGCGCGUUG- -5'
17063 3' -63.5 NC_004333.2 + 2943 0.66 0.304807
Target:  5'- uGC-CGCUGuaGCCCuGCaGCUGCGCGAg -3'
miRNA:   3'- -CGuGCGGC--UGGGcCGcCGGCGCGUUg -5'
17063 3' -63.5 NC_004333.2 + 37199 0.66 0.304807
Target:  5'- cGCGCGCCgGugCCGaGUu-CCGCcGCGACg -3'
miRNA:   3'- -CGUGCGG-CugGGC-CGccGGCG-CGUUG- -5'
17063 3' -63.5 NC_004333.2 + 37404 0.66 0.304807
Target:  5'- cUACGUCGGCgCUcGCGGuUUGCGCGGCg -3'
miRNA:   3'- cGUGCGGCUG-GGcCGCC-GGCGCGUUG- -5'
17063 3' -63.5 NC_004333.2 + 20392 0.66 0.304807
Target:  5'- -aAgGCCGugGCCgCaGUGGCCGCGCcGCu -3'
miRNA:   3'- cgUgCGGC--UGG-GcCGCCGGCGCGuUG- -5'
17063 3' -63.5 NC_004333.2 + 29708 0.66 0.304807
Target:  5'- gGUACGCC--UCCGGUgccgGGuuGCGCGAa -3'
miRNA:   3'- -CGUGCGGcuGGGCCG----CCggCGCGUUg -5'
17063 3' -63.5 NC_004333.2 + 39233 0.66 0.304807
Target:  5'- cGCACGCgaugGACagcgCCGGCGcgaacgaaGCCGCGUcGCg -3'
miRNA:   3'- -CGUGCGg---CUG----GGCCGC--------CGGCGCGuUG- -5'
17063 3' -63.5 NC_004333.2 + 41590 0.66 0.304807
Target:  5'- gGCGCGCCG---UGGCGGCgaugcgggcuuuCGCGCGuACg -3'
miRNA:   3'- -CGUGCGGCuggGCCGCCG------------GCGCGU-UG- -5'
17063 3' -63.5 NC_004333.2 + 566 0.66 0.304807
Target:  5'- uGC-CGCCcauCUCGGCGa-CGCGCAGCu -3'
miRNA:   3'- -CGuGCGGcu-GGGCCGCcgGCGCGUUG- -5'
17063 3' -63.5 NC_004333.2 + 15418 0.66 0.304807
Target:  5'- cCGCGCUuauGgCCGGCGGCagcgaccugCGCGUGACg -3'
miRNA:   3'- cGUGCGGc--UgGGCCGCCG---------GCGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.