miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17063 5' -52.3 NC_004333.2 + 45076 0.66 0.871111
Target:  5'- -gGUUCGGCgCGCuGUcGAACGAgGCGa- -3'
miRNA:   3'- cgCAAGCUG-GCG-CA-CUUGUUgCGCac -5'
17063 5' -52.3 NC_004333.2 + 33738 0.66 0.86212
Target:  5'- aGCGgaCGAgCGUGUGuggcugaucgacuGGCGGCGCGa- -3'
miRNA:   3'- -CGCaaGCUgGCGCAC-------------UUGUUGCGCac -5'
17063 5' -52.3 NC_004333.2 + 34759 0.66 0.854539
Target:  5'- gGCGUUCGGCCGCGc--GCAcC-CGUa -3'
miRNA:   3'- -CGCAAGCUGGCGCacuUGUuGcGCAc -5'
17063 5' -52.3 NC_004333.2 + 32297 0.66 0.854539
Target:  5'- gGCGaugUCGACgUGCGUcAGCAggucggucacgaGCGCGUGc -3'
miRNA:   3'- -CGCa--AGCUG-GCGCAcUUGU------------UGCGCAC- -5'
17063 5' -52.3 NC_004333.2 + 27648 0.66 0.845888
Target:  5'- aUGUUacaGGCCGCcagcGAGCGGCGCGg- -3'
miRNA:   3'- cGCAAg--CUGGCGca--CUUGUUGCGCac -5'
17063 5' -52.3 NC_004333.2 + 8160 0.66 0.845888
Target:  5'- gGCGacaggUCGGCCGCGUc--CAuCGCGUa -3'
miRNA:   3'- -CGCa----AGCUGGCGCAcuuGUuGCGCAc -5'
17063 5' -52.3 NC_004333.2 + 17814 0.66 0.843247
Target:  5'- cGCGgUCGAcgauccgaaCCGCGUGAaacugucugccgguGCGgccGCGCGUa -3'
miRNA:   3'- -CGCaAGCU---------GGCGCACU--------------UGU---UGCGCAc -5'
17063 5' -52.3 NC_004333.2 + 17337 0.66 0.837004
Target:  5'- gGCGcUCGA-CGCGUucuACGACGCGg- -3'
miRNA:   3'- -CGCaAGCUgGCGCAcu-UGUUGCGCac -5'
17063 5' -52.3 NC_004333.2 + 9476 0.67 0.827898
Target:  5'- aGCGccggCGGCUGCGgGAAuuuCAGCGCGg- -3'
miRNA:   3'- -CGCaa--GCUGGCGCaCUU---GUUGCGCac -5'
17063 5' -52.3 NC_004333.2 + 29377 0.67 0.827898
Target:  5'- cGCGcccugCGGCCGCGcGAuaAGCGCGg- -3'
miRNA:   3'- -CGCaa---GCUGGCGCaCUugUUGCGCac -5'
17063 5' -52.3 NC_004333.2 + 37311 0.67 0.827898
Target:  5'- gGCGUUCuucCCGCGcGGcgucaAGCGCGUGa -3'
miRNA:   3'- -CGCAAGcu-GGCGCaCUug---UUGCGCAC- -5'
17063 5' -52.3 NC_004333.2 + 47074 0.67 0.827898
Target:  5'- cGCGcgCGACUGCGacgUGAacuuGCGGCaCGUGa -3'
miRNA:   3'- -CGCaaGCUGGCGC---ACU----UGUUGcGCAC- -5'
17063 5' -52.3 NC_004333.2 + 38441 0.67 0.818579
Target:  5'- cGCGUcgaacuuugUCGAUC-CGUGGcGCGACGCGaUGa -3'
miRNA:   3'- -CGCA---------AGCUGGcGCACU-UGUUGCGC-AC- -5'
17063 5' -52.3 NC_004333.2 + 7606 0.67 0.81669
Target:  5'- uGCGUgaugaugcccugCGAUUGCGUcugcagcaccugGAACAGCGCGa- -3'
miRNA:   3'- -CGCAa-----------GCUGGCGCA------------CUUGUUGCGCac -5'
17063 5' -52.3 NC_004333.2 + 10001 0.67 0.809057
Target:  5'- cGCGgguugUCGGCCGUcUGcGCGACGUGc- -3'
miRNA:   3'- -CGCa----AGCUGGCGcACuUGUUGCGCac -5'
17063 5' -52.3 NC_004333.2 + 13358 0.67 0.809057
Target:  5'- gGUGUaCGGgCGCGgcacGAGCGGCGUGUc -3'
miRNA:   3'- -CGCAaGCUgGCGCa---CUUGUUGCGCAc -5'
17063 5' -52.3 NC_004333.2 + 10978 0.67 0.809057
Target:  5'- cGCGgaacUCGGCaccggcgcgCGuCGUGAGCGGCGUGUc -3'
miRNA:   3'- -CGCa---AGCUG---------GC-GCACUUGUUGCGCAc -5'
17063 5' -52.3 NC_004333.2 + 13191 0.67 0.799343
Target:  5'- cGCGauaCGAUCGUGUGcaGGCGcguCGCGUGg -3'
miRNA:   3'- -CGCaa-GCUGGCGCAC--UUGUu--GCGCAC- -5'
17063 5' -52.3 NC_004333.2 + 4319 0.67 0.789449
Target:  5'- uGCGUaaUCGcGCCGCGU--ACGAUGuCGUGc -3'
miRNA:   3'- -CGCA--AGC-UGGCGCAcuUGUUGC-GCAC- -5'
17063 5' -52.3 NC_004333.2 + 20232 0.68 0.779385
Target:  5'- gGCGaUCGACCGCGacUGGccuACGAuCGCGc- -3'
miRNA:   3'- -CGCaAGCUGGCGC--ACU---UGUU-GCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.