miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17064 3' -51.7 NC_004333.2 + 29754 0.66 0.871282
Target:  5'- cGCcGCuuuGGCGuuggauACCGUUCAuGAGCUg -3'
miRNA:   3'- -CGaCGuc-CCGCu-----UGGCAAGUuCUUGG- -5'
17064 3' -51.7 NC_004333.2 + 37115 0.66 0.871282
Target:  5'- aGCUGCGGGGCGuGCuCGaagcgcUCAc--GCCg -3'
miRNA:   3'- -CGACGUCCCGCuUG-GCa-----AGUucuUGG- -5'
17064 3' -51.7 NC_004333.2 + 6700 0.66 0.863012
Target:  5'- -gUGCGGGGCGcAUUGg-CGAcGAGCCa -3'
miRNA:   3'- cgACGUCCCGCuUGGCaaGUU-CUUGG- -5'
17064 3' -51.7 NC_004333.2 + 3462 0.66 0.863012
Target:  5'- aGCUGCGccucGGCGAACgCcUUCAAGuccuCCa -3'
miRNA:   3'- -CGACGUc---CCGCUUG-GcAAGUUCuu--GG- -5'
17064 3' -51.7 NC_004333.2 + 16212 0.66 0.863012
Target:  5'- --aGCAGGGCGGcuucgGCgUGUUCAacaAGGugCg -3'
miRNA:   3'- cgaCGUCCCGCU-----UG-GCAAGU---UCUugG- -5'
17064 3' -51.7 NC_004333.2 + 22777 0.66 0.862171
Target:  5'- cGCUGCAGGcGCGcucGCCGgauggcUCGAuguggucGAAUCa -3'
miRNA:   3'- -CGACGUCC-CGCu--UGGCa-----AGUU-------CUUGG- -5'
17064 3' -51.7 NC_004333.2 + 21618 0.66 0.854485
Target:  5'- --cGCAGGGaCGAagACCGgcgCGGGcuCCg -3'
miRNA:   3'- cgaCGUCCC-GCU--UGGCaa-GUUCuuGG- -5'
17064 3' -51.7 NC_004333.2 + 44007 0.66 0.854485
Target:  5'- cGCUGCAGcacgagcgcGGCGcGCUGUaCAcGAACUc -3'
miRNA:   3'- -CGACGUC---------CCGCuUGGCAaGUuCUUGG- -5'
17064 3' -51.7 NC_004333.2 + 46665 0.66 0.845711
Target:  5'- cGCUGCAGGcCGAcucGCCGUcgcucgcgcaguUCGAGcaAAUCu -3'
miRNA:   3'- -CGACGUCCcGCU---UGGCA------------AGUUC--UUGG- -5'
17064 3' -51.7 NC_004333.2 + 42450 0.66 0.845711
Target:  5'- cGUU-CGGGGCGuACCcUUCAAGGuucGCCc -3'
miRNA:   3'- -CGAcGUCCCGCuUGGcAAGUUCU---UGG- -5'
17064 3' -51.7 NC_004333.2 + 41440 0.67 0.836699
Target:  5'- cGCUGCucgacgcGGGCGAgucgGCCGU-CGuGAuCCa -3'
miRNA:   3'- -CGACGu------CCCGCU----UGGCAaGUuCUuGG- -5'
17064 3' -51.7 NC_004333.2 + 1895 0.67 0.836699
Target:  5'- --gGCGGGGUc-GCCGaUCAGGAaguACCa -3'
miRNA:   3'- cgaCGUCCCGcuUGGCaAGUUCU---UGG- -5'
17064 3' -51.7 NC_004333.2 + 9515 0.67 0.827458
Target:  5'- uGCUGCAuGGGCuuGCgCGUuuugcUCGAcGAGCUg -3'
miRNA:   3'- -CGACGU-CCCGcuUG-GCA-----AGUU-CUUGG- -5'
17064 3' -51.7 NC_004333.2 + 13905 0.67 0.817999
Target:  5'- gGCUGCGcGGCGGcuGCCGUggCGAucguGGCCg -3'
miRNA:   3'- -CGACGUcCCGCU--UGGCAa-GUUc---UUGG- -5'
17064 3' -51.7 NC_004333.2 + 17168 0.67 0.808332
Target:  5'- aGCUGCAGcGCaccuACCGcgCGAGcAGCCc -3'
miRNA:   3'- -CGACGUCcCGcu--UGGCaaGUUC-UUGG- -5'
17064 3' -51.7 NC_004333.2 + 44950 0.68 0.778199
Target:  5'- uGCUGCccggcgucaucGGGGCGGGCgGcgCGccGGGCCg -3'
miRNA:   3'- -CGACG-----------UCCCGCUUGgCaaGUu-CUUGG- -5'
17064 3' -51.7 NC_004333.2 + 26744 0.68 0.767817
Target:  5'- aUUGCGucGGCGccCCGUUCAGGaAGCCu -3'
miRNA:   3'- cGACGUc-CCGCuuGGCAAGUUC-UUGG- -5'
17064 3' -51.7 NC_004333.2 + 23057 0.69 0.72493
Target:  5'- -gUGUAGguGGUGAAcCCGUUCGAGuuGCCu -3'
miRNA:   3'- cgACGUC--CCGCUU-GGCAAGUUCu-UGG- -5'
17064 3' -51.7 NC_004333.2 + 7769 0.69 0.713931
Target:  5'- cGCcGaacaAGuaCGAGCCGUUCAGGAACUu -3'
miRNA:   3'- -CGaCg---UCccGCUUGGCAAGUUCUUGG- -5'
17064 3' -51.7 NC_004333.2 + 6311 0.71 0.612537
Target:  5'- gGCUGUucGGGCGAAUUGaUCGGGAaacggaugcccgACCg -3'
miRNA:   3'- -CGACGu-CCCGCUUGGCaAGUUCU------------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.