miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17065 3' -54.2 NC_004333.2 + 4062 0.66 0.767349
Target:  5'- aCCACcagccgCCGCGaaaCGaugCGAAGUCGCc- -3'
miRNA:   3'- -GGUGaa----GGCGUg--GCa--GCUUCAGCGau -5'
17065 3' -54.2 NC_004333.2 + 20550 0.66 0.764257
Target:  5'- aCAUggCCGCGCCGcUGAucgucggcgcgucgGGUCGCg- -3'
miRNA:   3'- gGUGaaGGCGUGGCaGCU--------------UCAGCGau -5'
17065 3' -54.2 NC_004333.2 + 21776 0.66 0.735903
Target:  5'- cCCACuUUCCGCGCUGcagCcAAG-CGCUAu -3'
miRNA:   3'- -GGUG-AAGGCGUGGCa--GcUUCaGCGAU- -5'
17065 3' -54.2 NC_004333.2 + 6869 0.66 0.725191
Target:  5'- aUCGCgcgCCGgGCgagcucggccuCGUCGAAGUCGCc- -3'
miRNA:   3'- -GGUGaa-GGCgUG-----------GCAGCUUCAGCGau -5'
17065 3' -54.2 NC_004333.2 + 11295 0.66 0.712211
Target:  5'- gCGCUguugaaCUGCGCCGUCGccuuguugcacuGGUCGCg- -3'
miRNA:   3'- gGUGAa-----GGCGUGGCAGCu-----------UCAGCGau -5'
17065 3' -54.2 NC_004333.2 + 8016 0.67 0.703493
Target:  5'- -uGCUUCCGCAUCGgagUGGAcGaCGCUAu -3'
miRNA:   3'- ggUGAAGGCGUGGCa--GCUU-CaGCGAU- -5'
17065 3' -54.2 NC_004333.2 + 34341 0.67 0.703493
Target:  5'- aCGCggcgcCCGUcgucgaACCGUCGccGUCGCUGc -3'
miRNA:   3'- gGUGaa---GGCG------UGGCAGCuuCAGCGAU- -5'
17065 3' -54.2 NC_004333.2 + 40885 0.67 0.692531
Target:  5'- gCCGugauCUUCCGC-CCGuUCGccGUCGCg- -3'
miRNA:   3'- -GGU----GAAGGCGuGGC-AGCuuCAGCGau -5'
17065 3' -54.2 NC_004333.2 + 30449 0.67 0.692531
Target:  5'- gCCACgUCUGUuucACCGUCGAcGUCacgGCUGc -3'
miRNA:   3'- -GGUGaAGGCG---UGGCAGCUuCAG---CGAU- -5'
17065 3' -54.2 NC_004333.2 + 15198 0.67 0.692531
Target:  5'- cUCGCgUUCCaGCACUauGcCGAAGUCGCa- -3'
miRNA:   3'- -GGUG-AAGG-CGUGG--CaGCUUCAGCGau -5'
17065 3' -54.2 NC_004333.2 + 245 0.67 0.670439
Target:  5'- cCCACg-CCGUGCCGuUCGAuguGGUCGUc- -3'
miRNA:   3'- -GGUGaaGGCGUGGC-AGCU---UCAGCGau -5'
17065 3' -54.2 NC_004333.2 + 31500 0.67 0.670439
Target:  5'- -uGCUUCCGCACCG-CGcGGU-GCa- -3'
miRNA:   3'- ggUGAAGGCGUGGCaGCuUCAgCGau -5'
17065 3' -54.2 NC_004333.2 + 27344 0.67 0.670439
Target:  5'- gCGCggCCGC-CCGUCGGgcaggaAGcCGCUAc -3'
miRNA:   3'- gGUGaaGGCGuGGCAGCU------UCaGCGAU- -5'
17065 3' -54.2 NC_004333.2 + 39537 0.67 0.670439
Target:  5'- gCCGggcgCCGCGCCGagcUCGAcGUCGCg- -3'
miRNA:   3'- -GGUgaa-GGCGUGGC---AGCUuCAGCGau -5'
17065 3' -54.2 NC_004333.2 + 45550 0.68 0.648198
Target:  5'- gCGCgaugaaCCGCGCgGUCGGucuGUCGCg- -3'
miRNA:   3'- gGUGaa----GGCGUGgCAGCUu--CAGCGau -5'
17065 3' -54.2 NC_004333.2 + 35789 0.68 0.63705
Target:  5'- aCACUggCGCGCCGggCGggG-CGCg- -3'
miRNA:   3'- gGUGAagGCGUGGCa-GCuuCaGCGau -5'
17065 3' -54.2 NC_004333.2 + 24252 0.68 0.622552
Target:  5'- uCCACggugugCCGC-CCGUCGAAaagaacccgaaauuGUCGCc- -3'
miRNA:   3'- -GGUGaa----GGCGuGGCAGCUU--------------CAGCGau -5'
17065 3' -54.2 NC_004333.2 + 1091 0.69 0.537666
Target:  5'- aUCACgugCCGCAaguucaCGUCGcAGUCGCg- -3'
miRNA:   3'- -GGUGaa-GGCGUg-----GCAGCuUCAGCGau -5'
17065 3' -54.2 NC_004333.2 + 29579 0.7 0.526891
Target:  5'- cCCGCgccugCCGCGCCGgUCGuuuGUUGCa- -3'
miRNA:   3'- -GGUGaa---GGCGUGGC-AGCuu-CAGCGau -5'
17065 3' -54.2 NC_004333.2 + 13873 0.7 0.516198
Target:  5'- gCGCg-CCGCGCCGcgCGAAGUCGg-- -3'
miRNA:   3'- gGUGaaGGCGUGGCa-GCUUCAGCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.