Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17065 | 3' | -54.2 | NC_004333.2 | + | 18730 | 1.09 | 0.001209 |
Target: 5'- cCCACUUCCGCACCGUCGAAGUCGCUAu -3' miRNA: 3'- -GGUGAAGGCGUGGCAGCUUCAGCGAU- -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 19412 | 0.72 | 0.375404 |
Target: 5'- gCCGCgacCCGCGCgGUCGAcgcggcgcucgcgcAGUUGCUGg -3' miRNA: 3'- -GGUGaa-GGCGUGgCAGCU--------------UCAGCGAU- -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 11625 | 0.72 | 0.405583 |
Target: 5'- gUCACUUCgCGCGCgaacgUGUCGAAGUagCGCUGc -3' miRNA: 3'- -GGUGAAG-GCGUG-----GCAGCUUCA--GCGAU- -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 29579 | 0.7 | 0.526891 |
Target: 5'- cCCGCgccugCCGCGCCGgUCGuuuGUUGCa- -3' miRNA: 3'- -GGUGaa---GGCGUGGC-AGCuu-CAGCGau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 26288 | 0.7 | 0.505593 |
Target: 5'- gCGCgcaCCGCGCCGUCGAugcgaaagccGGUCGaCg- -3' miRNA: 3'- gGUGaa-GGCGUGGCAGCU----------UCAGC-Gau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 13728 | 0.7 | 0.516198 |
Target: 5'- uCCAUgcUCGUGCCGUUGAAGUCGa-- -3' miRNA: 3'- -GGUGaaGGCGUGGCAGCUUCAGCgau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 13873 | 0.7 | 0.516198 |
Target: 5'- gCGCg-CCGCGCCGcgCGAAGUCGg-- -3' miRNA: 3'- gGUGaaGGCGUGGCa-GCUUCAGCgau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 1091 | 0.69 | 0.537666 |
Target: 5'- aUCACgugCCGCAaguucaCGUCGcAGUCGCg- -3' miRNA: 3'- -GGUGaa-GGCGUg-----GCAGCuUCAGCGau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 24252 | 0.68 | 0.622552 |
Target: 5'- uCCACggugugCCGC-CCGUCGAAaagaacccgaaauuGUCGCc- -3' miRNA: 3'- -GGUGaa----GGCGuGGCAGCUU--------------CAGCGau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 45550 | 0.68 | 0.648198 |
Target: 5'- gCGCgaugaaCCGCGCgGUCGGucuGUCGCg- -3' miRNA: 3'- gGUGaa----GGCGUGgCAGCUu--CAGCGau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 35789 | 0.68 | 0.63705 |
Target: 5'- aCACUggCGCGCCGggCGggG-CGCg- -3' miRNA: 3'- gGUGAagGCGUGGCa-GCuuCaGCGau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 30449 | 0.67 | 0.692531 |
Target: 5'- gCCACgUCUGUuucACCGUCGAcGUCacgGCUGc -3' miRNA: 3'- -GGUGaAGGCG---UGGCAGCUuCAG---CGAU- -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 34341 | 0.67 | 0.703493 |
Target: 5'- aCGCggcgcCCGUcgucgaACCGUCGccGUCGCUGc -3' miRNA: 3'- gGUGaa---GGCG------UGGCAGCuuCAGCGAU- -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 8016 | 0.67 | 0.703493 |
Target: 5'- -uGCUUCCGCAUCGgagUGGAcGaCGCUAu -3' miRNA: 3'- ggUGAAGGCGUGGCa--GCUU-CaGCGAU- -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 40885 | 0.67 | 0.692531 |
Target: 5'- gCCGugauCUUCCGC-CCGuUCGccGUCGCg- -3' miRNA: 3'- -GGU----GAAGGCGuGGC-AGCuuCAGCGau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 15198 | 0.67 | 0.692531 |
Target: 5'- cUCGCgUUCCaGCACUauGcCGAAGUCGCa- -3' miRNA: 3'- -GGUG-AAGG-CGUGG--CaGCUUCAGCGau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 39537 | 0.67 | 0.670439 |
Target: 5'- gCCGggcgCCGCGCCGagcUCGAcGUCGCg- -3' miRNA: 3'- -GGUgaa-GGCGUGGC---AGCUuCAGCGau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 27344 | 0.67 | 0.670439 |
Target: 5'- gCGCggCCGC-CCGUCGGgcaggaAGcCGCUAc -3' miRNA: 3'- gGUGaaGGCGuGGCAGCU------UCaGCGAU- -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 31500 | 0.67 | 0.670439 |
Target: 5'- -uGCUUCCGCACCG-CGcGGU-GCa- -3' miRNA: 3'- ggUGAAGGCGUGGCaGCuUCAgCGau -5' |
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17065 | 3' | -54.2 | NC_004333.2 | + | 245 | 0.67 | 0.670439 |
Target: 5'- cCCACg-CCGUGCCGuUCGAuguGGUCGUc- -3' miRNA: 3'- -GGUGaaGGCGUGGC-AGCU---UCAGCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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