miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17067 5' -51.5 NC_004333.2 + 27436 0.66 0.878558
Target:  5'- cCGcgUCGGCG---AUGUCCGGCAGc- -3'
miRNA:   3'- aGCa-AGCCGCacuUAUAGGUCGUCcu -5'
17067 5' -51.5 NC_004333.2 + 38753 0.66 0.870484
Target:  5'- cCGgaCGGCGUGcgcagCCcGCAGGGc -3'
miRNA:   3'- aGCaaGCCGCACuuauaGGuCGUCCU- -5'
17067 5' -51.5 NC_004333.2 + 5125 0.66 0.862145
Target:  5'- aCGUUCGGCGUcGGUGUCguagaacucgaCAuGCGGGc -3'
miRNA:   3'- aGCAAGCCGCAcUUAUAG-----------GU-CGUCCu -5'
17067 5' -51.5 NC_004333.2 + 5066 0.66 0.844702
Target:  5'- gUCGgcgCGGCGcUGAAcAgcgUCAGCAGGu -3'
miRNA:   3'- -AGCaa-GCCGC-ACUUaUa--GGUCGUCCu -5'
17067 5' -51.5 NC_004333.2 + 11001 0.68 0.755596
Target:  5'- gUCGUgagCGGCGUGucg--CCGcgcuGCGGGAu -3'
miRNA:   3'- -AGCAa--GCCGCACuuauaGGU----CGUCCU- -5'
17067 5' -51.5 NC_004333.2 + 10521 0.7 0.655573
Target:  5'- gUCGggCGcGCGcucgaUGAAUgucugAUCCGGCGGGAu -3'
miRNA:   3'- -AGCaaGC-CGC-----ACUUA-----UAGGUCGUCCU- -5'
17067 5' -51.5 NC_004333.2 + 35038 0.7 0.644181
Target:  5'- ---aUCGGCGUGAcgcgcUGUCCuGCGGGu -3'
miRNA:   3'- agcaAGCCGCACUu----AUAGGuCGUCCu -5'
17067 5' -51.5 NC_004333.2 + 25745 0.73 0.509483
Target:  5'- cCGgUCGGCGUGAAgGUCgGuuGCGGGAc -3'
miRNA:   3'- aGCaAGCCGCACUUaUAGgU--CGUCCU- -5'
17067 5' -51.5 NC_004333.2 + 11712 0.74 0.443401
Target:  5'- cCGggCGGCGUGcuggcguccugcgcGAUGUCCGGCAGc- -3'
miRNA:   3'- aGCaaGCCGCAC--------------UUAUAGGUCGUCcu -5'
17067 5' -51.5 NC_004333.2 + 42844 0.74 0.436355
Target:  5'- aCGg-CGGCGUGAcgAUCCAGCGcGAa -3'
miRNA:   3'- aGCaaGCCGCACUuaUAGGUCGUcCU- -5'
17067 5' -51.5 NC_004333.2 + 17121 1.1 0.001849
Target:  5'- gUCGUUCGGCGUGAAUAUCCAGCAGGAc -3'
miRNA:   3'- -AGCAAGCCGCACUUAUAGGUCGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.