Results 1 - 20 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17068 | 5' | -64.5 | NC_004333.2 | + | 9111 | 0.66 | 0.283722 |
Target: 5'- gGCGCacgaGUCGCGCGuacucGCCGUC-CGGCu -3' miRNA: 3'- -CGCGacg-CGGCGCGC-----CGGCAGcGCUG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 42011 | 0.66 | 0.283722 |
Target: 5'- uCGgUGCGCgugaagCGCGCGGCCaacgagCGgGGCg -3' miRNA: 3'- cGCgACGCG------GCGCGCCGGca----GCgCUG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 8841 | 0.66 | 0.283722 |
Target: 5'- uGCGgUGCGUCGUagaaGCGcGCCGcCGCcGAg -3' miRNA: 3'- -CGCgACGCGGCG----CGC-CGGCaGCG-CUg -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 26330 | 0.66 | 0.283722 |
Target: 5'- aGCGC-GCGCCGCGUcGCgGUauuCGAUg -3' miRNA: 3'- -CGCGaCGCGGCGCGcCGgCAgc-GCUG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 38546 | 0.66 | 0.283722 |
Target: 5'- gGCGCaggcGCGCCGCcgGCaGCCGgugCGCa-- -3' miRNA: 3'- -CGCGa---CGCGGCG--CGcCGGCa--GCGcug -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 39536 | 0.66 | 0.283722 |
Target: 5'- -aGCcggGCGCCGCGcCGaGCucgaCGUCGCG-Ca -3' miRNA: 3'- cgCGa--CGCGGCGC-GC-CG----GCAGCGCuG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 36562 | 0.66 | 0.277009 |
Target: 5'- cGCGC-GCGaaGUGaCGGCCGgCGCGuuuCa -3' miRNA: 3'- -CGCGaCGCggCGC-GCCGGCaGCGCu--G- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 17540 | 0.66 | 0.277009 |
Target: 5'- aGCGCa-CGCCGCGCcuuGCCG-CGCuGCu -3' miRNA: 3'- -CGCGacGCGGCGCGc--CGGCaGCGcUG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 7456 | 0.66 | 0.277009 |
Target: 5'- aGCGacuUGcCGCCGC-CGGUgaCGaUCGCGGCg -3' miRNA: 3'- -CGCg--AC-GCGGCGcGCCG--GC-AGCGCUG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 8217 | 0.66 | 0.277009 |
Target: 5'- aCGCUGCGCggcaggaugaCGC-CGGCCcG-CGCGAg -3' miRNA: 3'- cGCGACGCG----------GCGcGCCGG-CaGCGCUg -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 47950 | 0.66 | 0.277009 |
Target: 5'- -aGCUGCucGgCGCGCuGGUCGUCgGCGuCa -3' miRNA: 3'- cgCGACG--CgGCGCG-CCGGCAG-CGCuG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 45145 | 0.66 | 0.276344 |
Target: 5'- -aGCUGcCGUacgaucugaaguuCGCGCGcuaCGUCGCGGCg -3' miRNA: 3'- cgCGAC-GCG-------------GCGCGCcg-GCAGCGCUG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 44851 | 0.66 | 0.27502 |
Target: 5'- cGCGCgaaGCGauaguuuaauucaaCCGCGCGccGCCG-CGCGcACa -3' miRNA: 3'- -CGCGa--CGC--------------GGCGCGC--CGGCaGCGC-UG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 30727 | 0.66 | 0.272385 |
Target: 5'- cGCGUUGCGCCacauccggugcccGgGCGacguuuugaucgucaGCgCGUCGUGACc -3' miRNA: 3'- -CGCGACGCGG-------------CgCGC---------------CG-GCAGCGCUG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 2071 | 0.66 | 0.263964 |
Target: 5'- aGCGC-GCaCCGCGCucGGCCaagGUUGCGGu -3' miRNA: 3'- -CGCGaCGcGGCGCG--CCGG---CAGCGCUg -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 31078 | 0.66 | 0.263964 |
Target: 5'- aCGCgaGCGCCugcagguucgGCGCcuGGcCCGUCaGCGGCg -3' miRNA: 3'- cGCGa-CGCGG----------CGCG--CC-GGCAG-CGCUG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 9999 | 0.66 | 0.263964 |
Target: 5'- uGCGC-GgGuuGU-CGGCCGUCugcGCGACg -3' miRNA: 3'- -CGCGaCgCggCGcGCCGGCAG---CGCUG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 45549 | 0.66 | 0.263964 |
Target: 5'- aGCGCgaUGaaCCGCGCGGUCGgucugUCGCG-Ca -3' miRNA: 3'- -CGCG--ACgcGGCGCGCCGGC-----AGCGCuG- -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 38977 | 0.66 | 0.263964 |
Target: 5'- uCGgUGCGCaC-CGCGaucgacacuGCCGUCGCGAa -3' miRNA: 3'- cGCgACGCG-GcGCGC---------CGGCAGCGCUg -5' |
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17068 | 5' | -64.5 | NC_004333.2 | + | 8633 | 0.66 | 0.261416 |
Target: 5'- uGCGCgacgucgagcucgGCGCgGCGCccGGCUugcUCGUGACg -3' miRNA: 3'- -CGCGa------------CGCGgCGCG--CCGGc--AGCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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