miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17068 5' -64.5 NC_004333.2 + 9111 0.66 0.283722
Target:  5'- gGCGCacgaGUCGCGCGuacucGCCGUC-CGGCu -3'
miRNA:   3'- -CGCGacg-CGGCGCGC-----CGGCAGcGCUG- -5'
17068 5' -64.5 NC_004333.2 + 38977 0.66 0.263964
Target:  5'- uCGgUGCGCaC-CGCGaucgacacuGCCGUCGCGAa -3'
miRNA:   3'- cGCgACGCG-GcGCGC---------CGGCAGCGCUg -5'
17068 5' -64.5 NC_004333.2 + 2071 0.66 0.263964
Target:  5'- aGCGC-GCaCCGCGCucGGCCaagGUUGCGGu -3'
miRNA:   3'- -CGCGaCGcGGCGCG--CCGG---CAGCGCUg -5'
17068 5' -64.5 NC_004333.2 + 17849 0.66 0.257005
Target:  5'- cCGgUGCgGCCGCGCGuauggcgggugguGUCGcaggCGCGACg -3'
miRNA:   3'- cGCgACG-CGGCGCGC-------------CGGCa---GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 41515 0.66 0.25638
Target:  5'- uGCGCgccugcucgagcGCGCCgaGCGCGcuGCCGagCGCGAUc -3'
miRNA:   3'- -CGCGa-----------CGCGG--CGCGC--CGGCa-GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 25995 0.66 0.251423
Target:  5'- cCGCcgaacCGCCGC-CGGCCGcCGcCGGCg -3'
miRNA:   3'- cGCGac---GCGGCGcGCCGGCaGC-GCUG- -5'
17068 5' -64.5 NC_004333.2 + 34419 0.66 0.251423
Target:  5'- cGCGCgaGCGgCGCGCGG-CGUCcuacgcgcuCGACu -3'
miRNA:   3'- -CGCGa-CGCgGCGCGCCgGCAGc--------GCUG- -5'
17068 5' -64.5 NC_004333.2 + 33928 0.66 0.251423
Target:  5'- cCGCUggcucgaaagagGCGCgCGCGCacGCCGUCGCa-- -3'
miRNA:   3'- cGCGA------------CGCG-GCGCGc-CGGCAGCGcug -5'
17068 5' -64.5 NC_004333.2 + 46139 0.66 0.245338
Target:  5'- cGCGCggGCGUCGacgugaucgaUGCGGCCGUgaCGUcgGGCa -3'
miRNA:   3'- -CGCGa-CGCGGC----------GCGCCGGCA--GCG--CUG- -5'
17068 5' -64.5 NC_004333.2 + 45549 0.66 0.263964
Target:  5'- aGCGCgaUGaaCCGCGCGGUCGgucugUCGCG-Ca -3'
miRNA:   3'- -CGCG--ACgcGGCGCGCCGGC-----AGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 30727 0.66 0.272385
Target:  5'- cGCGUUGCGCCacauccggugcccGgGCGacguuuugaucgucaGCgCGUCGUGACc -3'
miRNA:   3'- -CGCGACGCGG-------------CgCGC---------------CG-GCAGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 44851 0.66 0.27502
Target:  5'- cGCGCgaaGCGauaguuuaauucaaCCGCGCGccGCCG-CGCGcACa -3'
miRNA:   3'- -CGCGa--CGC--------------GGCGCGC--CGGCaGCGC-UG- -5'
17068 5' -64.5 NC_004333.2 + 39536 0.66 0.283722
Target:  5'- -aGCcggGCGCCGCGcCGaGCucgaCGUCGCG-Ca -3'
miRNA:   3'- cgCGa--CGCGGCGC-GC-CG----GCAGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 38546 0.66 0.283722
Target:  5'- gGCGCaggcGCGCCGCcgGCaGCCGgugCGCa-- -3'
miRNA:   3'- -CGCGa---CGCGGCG--CGcCGGCa--GCGcug -5'
17068 5' -64.5 NC_004333.2 + 26330 0.66 0.283722
Target:  5'- aGCGC-GCGCCGCGUcGCgGUauuCGAUg -3'
miRNA:   3'- -CGCGaCGCGGCGCGcCGgCAgc-GCUG- -5'
17068 5' -64.5 NC_004333.2 + 8841 0.66 0.283722
Target:  5'- uGCGgUGCGUCGUagaaGCGcGCCGcCGCcGAg -3'
miRNA:   3'- -CGCgACGCGGCG----CGC-CGGCaGCG-CUg -5'
17068 5' -64.5 NC_004333.2 + 36562 0.66 0.277009
Target:  5'- cGCGC-GCGaaGUGaCGGCCGgCGCGuuuCa -3'
miRNA:   3'- -CGCGaCGCggCGC-GCCGGCaGCGCu--G- -5'
17068 5' -64.5 NC_004333.2 + 17540 0.66 0.277009
Target:  5'- aGCGCa-CGCCGCGCcuuGCCG-CGCuGCu -3'
miRNA:   3'- -CGCGacGCGGCGCGc--CGGCaGCGcUG- -5'
17068 5' -64.5 NC_004333.2 + 7456 0.66 0.277009
Target:  5'- aGCGacuUGcCGCCGC-CGGUgaCGaUCGCGGCg -3'
miRNA:   3'- -CGCg--AC-GCGGCGcGCCG--GC-AGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 45145 0.66 0.276344
Target:  5'- -aGCUGcCGUacgaucugaaguuCGCGCGcuaCGUCGCGGCg -3'
miRNA:   3'- cgCGAC-GCG-------------GCGCGCcg-GCAGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.