miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17068 5' -64.5 NC_004333.2 + 16942 1.03 0.000349
Target:  5'- gGCGCUGCGCCGCGCGGCCGUCGCGcCg -3'
miRNA:   3'- -CGCGACGCGGCGCGCCGGCAGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 41580 0.8 0.021701
Target:  5'- gGCGCUGgGCgGCGC-GCCGUgGCGGCg -3'
miRNA:   3'- -CGCGACgCGgCGCGcCGGCAgCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 13874 0.8 0.022318
Target:  5'- cGCGCcGCGCCGCGCgaagucGGCCGgcacgggcugCGCGGCg -3'
miRNA:   3'- -CGCGaCGCGGCGCG------CCGGCa---------GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 10862 0.79 0.029525
Target:  5'- cGCGCuUGaCGCCGCGCGggaagaacGCCGgCGCGACa -3'
miRNA:   3'- -CGCG-AC-GCGGCGCGC--------CGGCaGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 19406 0.77 0.036902
Target:  5'- cGCGCcgccGCGacCCGCGCGGUCGaCGCGGCg -3'
miRNA:   3'- -CGCGa---CGC--GGCGCGCCGGCaGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 36264 0.77 0.040112
Target:  5'- cGCGC-GCGCCGCuGCGcauGCCGggcCGCGACg -3'
miRNA:   3'- -CGCGaCGCGGCG-CGC---CGGCa--GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 29887 0.77 0.041241
Target:  5'- gGCGaaGCGCUGCGCgaucgGGCCGcgCGCGGCa -3'
miRNA:   3'- -CGCgaCGCGGCGCG-----CCGGCa-GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 13936 0.76 0.046078
Target:  5'- cCGCUGcCGCCaGCGUGGCCGccuUgGCGACu -3'
miRNA:   3'- cGCGAC-GCGG-CGCGCCGGC---AgCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 13752 0.76 0.050065
Target:  5'- aGCGCguagGaCGCCGCGC-GCCGcucgCGCGGCg -3'
miRNA:   3'- -CGCGa---C-GCGGCGCGcCGGCa---GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 18197 0.75 0.052762
Target:  5'- cGCGCUcgGCGCCgguggcaGCGCGGCCG-CGCucGGCa -3'
miRNA:   3'- -CGCGA--CGCGG-------CGCGCCGGCaGCG--CUG- -5'
17068 5' -64.5 NC_004333.2 + 37371 0.75 0.058908
Target:  5'- cGUGCaccGCGUCGCGCGGCCGUCcucaucguccuacGuCGGCg -3'
miRNA:   3'- -CGCGa--CGCGGCGCGCCGGCAG-------------C-GCUG- -5'
17068 5' -64.5 NC_004333.2 + 41438 0.75 0.060549
Target:  5'- gGCGCUGCucgaCGCGggcgaguCGGCCGUCGUGAUc -3'
miRNA:   3'- -CGCGACGcg--GCGC-------GCCGGCAGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 20740 0.75 0.060716
Target:  5'- cGCGCUGCcggacaucGCCGaCGCGGCUG-CGCGcCu -3'
miRNA:   3'- -CGCGACG--------CGGC-GCGCCGGCaGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 28755 0.74 0.067755
Target:  5'- uGCGCgaGCGCCGCGuCGaCCGcgcgggUCGCGGCg -3'
miRNA:   3'- -CGCGa-CGCGGCGC-GCcGGC------AGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 8988 0.74 0.067755
Target:  5'- uGCGCggcgGCGaCCGaCGCGGCguUCGCGGCu -3'
miRNA:   3'- -CGCGa---CGC-GGC-GCGCCGgcAGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 2331 0.74 0.069634
Target:  5'- gGCGgaaUGCGagcaCCGUGCGGCCGUUGCG-Ca -3'
miRNA:   3'- -CGCg--ACGC----GGCGCGCCGGCAGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 27292 0.74 0.073544
Target:  5'- cGCGCUGCGCCGgGC--UCGUCGCcGCc -3'
miRNA:   3'- -CGCGACGCGGCgCGccGGCAGCGcUG- -5'
17068 5' -64.5 NC_004333.2 + 19626 0.73 0.075577
Target:  5'- aGCGCgGCGa-GCGCGGCCGaCGCuGGCc -3'
miRNA:   3'- -CGCGaCGCggCGCGCCGGCaGCG-CUG- -5'
17068 5' -64.5 NC_004333.2 + 47490 0.73 0.075577
Target:  5'- cGCGCUGaacgaGgCGC-CGGCCGgCGCGACc -3'
miRNA:   3'- -CGCGACg----CgGCGcGCCGGCaGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 27663 0.73 0.079806
Target:  5'- aGCGagcgGCGCgGCgGCGGCCGgcagcgguugCGCGGCa -3'
miRNA:   3'- -CGCga--CGCGgCG-CGCCGGCa---------GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.