miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17068 5' -64.5 NC_004333.2 + 39073 0.66 0.257631
Target:  5'- cGCGCgacucgUGCGCCGUGCgucGGCacUCGUGAa -3'
miRNA:   3'- -CGCG------ACGCGGCGCG---CCGgcAGCGCUg -5'
17068 5' -64.5 NC_004333.2 + 17630 0.66 0.257631
Target:  5'- cGCGCccgGUGCCGU--GGCCGacacguUCGCGAa -3'
miRNA:   3'- -CGCGa--CGCGGCGcgCCGGC------AGCGCUg -5'
17068 5' -64.5 NC_004333.2 + 17849 0.66 0.257005
Target:  5'- cCGgUGCgGCCGCGCGuauggcgggugguGUCGcaggCGCGACg -3'
miRNA:   3'- cGCgACG-CGGCGCGC-------------CGGCa---GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 47185 0.66 0.257005
Target:  5'- cGCGCU--GCCGCGCaGCacgaggcacaaguCGcCGCGACg -3'
miRNA:   3'- -CGCGAcgCGGCGCGcCG-------------GCaGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 41515 0.66 0.25638
Target:  5'- uGCGCgccugcucgagcGCGCCgaGCGCGcuGCCGagCGCGAUc -3'
miRNA:   3'- -CGCGa-----------CGCGG--CGCGC--CGGCa-GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 34419 0.66 0.251423
Target:  5'- cGCGCgaGCGgCGCGCGG-CGUCcuacgcgcuCGACu -3'
miRNA:   3'- -CGCGa-CGCgGCGCGCCgGCAGc--------GCUG- -5'
17068 5' -64.5 NC_004333.2 + 25995 0.66 0.251423
Target:  5'- cCGCcgaacCGCCGC-CGGCCGcCGcCGGCg -3'
miRNA:   3'- cGCGac---GCGGCGcGCCGGCaGC-GCUG- -5'
17068 5' -64.5 NC_004333.2 + 33928 0.66 0.251423
Target:  5'- cCGCUggcucgaaagagGCGCgCGCGCacGCCGUCGCa-- -3'
miRNA:   3'- cGCGA------------CGCG-GCGCGc-CGGCAGCGcug -5'
17068 5' -64.5 NC_004333.2 + 35890 0.66 0.250809
Target:  5'- cCGUUGCGaCGCGCacGCCGUUauacgccacaucgGCGACa -3'
miRNA:   3'- cGCGACGCgGCGCGc-CGGCAG-------------CGCUG- -5'
17068 5' -64.5 NC_004333.2 + 15368 0.66 0.245338
Target:  5'- cGCGCUGaaCGCCGaaugcuuguaaCGUGGCCGgugcacaaGCGAa -3'
miRNA:   3'- -CGCGAC--GCGGC-----------GCGCCGGCag------CGCUg -5'
17068 5' -64.5 NC_004333.2 + 25892 0.66 0.245338
Target:  5'- aGCGCcaaGCGCCGCGCuucGCCGcccugCGCu-- -3'
miRNA:   3'- -CGCGa--CGCGGCGCGc--CGGCa----GCGcug -5'
17068 5' -64.5 NC_004333.2 + 46139 0.66 0.245338
Target:  5'- cGCGCggGCGUCGacgugaucgaUGCGGCCGUgaCGUcgGGCa -3'
miRNA:   3'- -CGCGa-CGCGGC----------GCGCCGGCA--GCG--CUG- -5'
17068 5' -64.5 NC_004333.2 + 25410 0.67 0.239377
Target:  5'- aGCGCgccugcagcGUGCCgGCgGCGGCCGUCaCGcCg -3'
miRNA:   3'- -CGCGa--------CGCGG-CG-CGCCGGCAGcGCuG- -5'
17068 5' -64.5 NC_004333.2 + 41834 0.67 0.239377
Target:  5'- gGCGCaucguaaaaucGCGCgGUGCGGUCGUCcucaCGGCu -3'
miRNA:   3'- -CGCGa----------CGCGgCGCGCCGGCAGc---GCUG- -5'
17068 5' -64.5 NC_004333.2 + 9167 0.67 0.239377
Target:  5'- cGCaGCUGCGCgCuuGCGuuCGuUCGCGACg -3'
miRNA:   3'- -CG-CGACGCG-GcgCGCcgGC-AGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 36095 0.67 0.235858
Target:  5'- gGCGCUGCgcgccaGCCacguacgcaagguugGCGaCGGCCuG-CGCGACc -3'
miRNA:   3'- -CGCGACG------CGG---------------CGC-GCCGG-CaGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 10200 0.67 0.233536
Target:  5'- cGCGCacGCGCa-UGCGGCCGUCgGCa-- -3'
miRNA:   3'- -CGCGa-CGCGgcGCGCCGGCAG-CGcug -5'
17068 5' -64.5 NC_004333.2 + 29861 0.67 0.233536
Target:  5'- gGCGUgaggaucgUGCGCaCGCGCGuGCCG--GCGAa -3'
miRNA:   3'- -CGCG--------ACGCG-GCGCGC-CGGCagCGCUg -5'
17068 5' -64.5 NC_004333.2 + 17766 0.67 0.233536
Target:  5'- -aGCcgGCGCCGCGCGGUaaUUGCa-- -3'
miRNA:   3'- cgCGa-CGCGGCGCGCCGgcAGCGcug -5'
17068 5' -64.5 NC_004333.2 + 19554 0.67 0.233536
Target:  5'- gGCGCcG-GUCGCaCGGUCGgCGCGGCa -3'
miRNA:   3'- -CGCGaCgCGGCGcGCCGGCaGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.