miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17068 5' -64.5 NC_004333.2 + 684 0.7 0.143373
Target:  5'- cGCGCcggccgGCGCCucguucaGCGCGGCaGUCGCcGCc -3'
miRNA:   3'- -CGCGa-----CGCGG-------CGCGCCGgCAGCGcUG- -5'
17068 5' -64.5 NC_004333.2 + 697 0.68 0.186221
Target:  5'- aGCGCgaucGUGCCGCcgcccGCGagcGCCGUgGCGAg -3'
miRNA:   3'- -CGCGa---CGCGGCG-----CGC---CGGCAgCGCUg -5'
17068 5' -64.5 NC_004333.2 + 940 0.71 0.116353
Target:  5'- uGUGCUGCGaugcucaauCCgcucgaaaguaGCGCGcCCGUCGCGGCg -3'
miRNA:   3'- -CGCGACGC---------GG-----------CGCGCcGGCAGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 1121 0.69 0.172431
Target:  5'- cGCGCgaagucgGUGCCGUGCuGCg--CGCGACg -3'
miRNA:   3'- -CGCGa------CGCGGCGCGcCGgcaGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 1232 0.71 0.110307
Target:  5'- gGCGC-GCGCCGCcuUGGCUGcgcgcgaggcuUCGCGGCg -3'
miRNA:   3'- -CGCGaCGCGGCGc-GCCGGC-----------AGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 1646 0.71 0.127346
Target:  5'- gGCGUagcccugaaUGCGCUGCGCGGucggaaacagcgcuuCCGUCGUG-Ca -3'
miRNA:   3'- -CGCG---------ACGCGGCGCGCC---------------GGCAGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 2071 0.66 0.263964
Target:  5'- aGCGC-GCaCCGCGCucGGCCaagGUUGCGGu -3'
miRNA:   3'- -CGCGaCGcGGCGCG--CCGG---CAGCGCUg -5'
17068 5' -64.5 NC_004333.2 + 2331 0.74 0.069634
Target:  5'- gGCGgaaUGCGagcaCCGUGCGGCCGUUGCG-Ca -3'
miRNA:   3'- -CGCg--ACGC----GGCGCGCCGGCAGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 2687 0.71 0.113292
Target:  5'- aGCGUcGCGCCgGCgGCGGCCGacaggccgaucUCGuCGGCg -3'
miRNA:   3'- -CGCGaCGCGG-CG-CGCCGGC-----------AGC-GCUG- -5'
17068 5' -64.5 NC_004333.2 + 2913 0.67 0.211365
Target:  5'- ----cGUGCUGCGCaGCgGUCGUGACc -3'
miRNA:   3'- cgcgaCGCGGCGCGcCGgCAGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 2998 0.72 0.096455
Target:  5'- aCGCU-CGCCgGCGCGuCCGcCGCGACg -3'
miRNA:   3'- cGCGAcGCGG-CGCGCcGGCaGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 3002 0.7 0.132845
Target:  5'- cCGCUGCGCaucagcaaGCGCGGCCaguaUCGggcCGACu -3'
miRNA:   3'- cGCGACGCGg-------CGCGCCGGc---AGC---GCUG- -5'
17068 5' -64.5 NC_004333.2 + 3149 0.71 0.110307
Target:  5'- cGCGCcgccaGCGCCacGCGCGGUCGa-GCGGCc -3'
miRNA:   3'- -CGCGa----CGCGG--CGCGCCGGCagCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 3309 0.7 0.137836
Target:  5'- cGCGCgGCGgCGCGCGGuuGaauuaaacuaucgcuUCGCG-Cg -3'
miRNA:   3'- -CGCGaCGCgGCGCGCCggC---------------AGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 3551 0.72 0.099087
Target:  5'- aCGCgGUGCCGCGCaGCgCGUCGgcCGACc -3'
miRNA:   3'- cGCGaCGCGGCGCGcCG-GCAGC--GCUG- -5'
17068 5' -64.5 NC_004333.2 + 4769 0.69 0.172431
Target:  5'- aGCGuCUGC-CUGCGCGGgCGgcugCGgGACc -3'
miRNA:   3'- -CGC-GACGcGGCGCGCCgGCa---GCgCUG- -5'
17068 5' -64.5 NC_004333.2 + 4856 0.68 0.186221
Target:  5'- cGCGC-GCGCCGUGCcgaugccgcuGCCGcCGCuGACc -3'
miRNA:   3'- -CGCGaCGCGGCGCGc---------CGGCaGCG-CUG- -5'
17068 5' -64.5 NC_004333.2 + 4901 0.71 0.116353
Target:  5'- cGCGCUGCGauaGUGC-GCCGUCGCc-- -3'
miRNA:   3'- -CGCGACGCgg-CGCGcCGGCAGCGcug -5'
17068 5' -64.5 NC_004333.2 + 6349 0.67 0.211365
Target:  5'- cCGCUcGCgGCCGgGC-GCCGUCGUGcCg -3'
miRNA:   3'- cGCGA-CG-CGGCgCGcCGGCAGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 7456 0.66 0.277009
Target:  5'- aGCGacuUGcCGCCGC-CGGUgaCGaUCGCGGCg -3'
miRNA:   3'- -CGCg--AC-GCGGCGcGCCG--GC-AGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.