miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17068 5' -64.5 NC_004333.2 + 13874 0.8 0.022318
Target:  5'- cGCGCcGCGCCGCGCgaagucGGCCGgcacgggcugCGCGGCg -3'
miRNA:   3'- -CGCGaCGCGGCGCG------CCGGCa---------GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 2998 0.72 0.096455
Target:  5'- aCGCU-CGCCgGCGCGuCCGcCGCGACg -3'
miRNA:   3'- cGCGAcGCGG-CGCGCcGGCaGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 3551 0.72 0.099087
Target:  5'- aCGCgGUGCCGCGCaGCgCGUCGgcCGACc -3'
miRNA:   3'- cGCGaCGCGGCGCGcCG-GCAGC--GCUG- -5'
17068 5' -64.5 NC_004333.2 + 42011 0.66 0.283722
Target:  5'- uCGgUGCGCgugaagCGCGCGGCCaacgagCGgGGCg -3'
miRNA:   3'- cGCgACGCG------GCGCGCCGGca----GCgCUG- -5'
17068 5' -64.5 NC_004333.2 + 13752 0.76 0.050065
Target:  5'- aGCGCguagGaCGCCGCGC-GCCGcucgCGCGGCg -3'
miRNA:   3'- -CGCGa---C-GCGGCGCGcCGGCa---GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 37371 0.75 0.058908
Target:  5'- cGUGCaccGCGUCGCGCGGCCGUCcucaucguccuacGuCGGCg -3'
miRNA:   3'- -CGCGa--CGCGGCGCGCCGGCAG-------------C-GCUG- -5'
17068 5' -64.5 NC_004333.2 + 20740 0.75 0.060716
Target:  5'- cGCGCUGCcggacaucGCCGaCGCGGCUG-CGCGcCu -3'
miRNA:   3'- -CGCGACG--------CGGC-GCGCCGGCaGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 8988 0.74 0.067755
Target:  5'- uGCGCggcgGCGaCCGaCGCGGCguUCGCGGCu -3'
miRNA:   3'- -CGCGa---CGC-GGC-GCGCCGgcAGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 19626 0.73 0.075577
Target:  5'- aGCGCgGCGa-GCGCGGCCGaCGCuGGCc -3'
miRNA:   3'- -CGCGaCGCggCGCGCCGGCaGCG-CUG- -5'
17068 5' -64.5 NC_004333.2 + 25649 0.72 0.09389
Target:  5'- aGCGCggucgaaaGCGUCuuGcCGGCCGUCGCGAa -3'
miRNA:   3'- -CGCGa-------CGCGGcgC-GCCGGCAGCGCUg -5'
17068 5' -64.5 NC_004333.2 + 29960 0.73 0.082004
Target:  5'- aGCGC-GUGCCgaGCGCGGCCG-CGCuGCc -3'
miRNA:   3'- -CGCGaCGCGG--CGCGCCGGCaGCGcUG- -5'
17068 5' -64.5 NC_004333.2 + 2331 0.74 0.069634
Target:  5'- gGCGgaaUGCGagcaCCGUGCGGCCGUUGCG-Ca -3'
miRNA:   3'- -CGCg--ACGC----GGCGCGCCGGCAGCGCuG- -5'
17068 5' -64.5 NC_004333.2 + 10862 0.79 0.029525
Target:  5'- cGCGCuUGaCGCCGCGCGggaagaacGCCGgCGCGACa -3'
miRNA:   3'- -CGCG-AC-GCGGCGCGC--------CGGCaGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 25940 0.73 0.088951
Target:  5'- cGCGCgGCGCgaUGCcgGCGGCCaGUaCGCGGCg -3'
miRNA:   3'- -CGCGaCGCG--GCG--CGCCGG-CA-GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 29887 0.77 0.041241
Target:  5'- gGCGaaGCGCUGCGCgaucgGGCCGcgCGCGGCa -3'
miRNA:   3'- -CGCgaCGCGGCGCG-----CCGGCa-GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 28755 0.74 0.067755
Target:  5'- uGCGCgaGCGCCGCGuCGaCCGcgcgggUCGCGGCg -3'
miRNA:   3'- -CGCGa-CGCGGCGC-GCcGGC------AGCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 45055 0.72 0.091389
Target:  5'- aCGCUGaacaCCGCGCGGCCG-CGCccgGGCa -3'
miRNA:   3'- cGCGACgc--GGCGCGCCGGCaGCG---CUG- -5'
17068 5' -64.5 NC_004333.2 + 30951 0.72 0.099087
Target:  5'- gGCGauaCGCCG-GCGGCCGUcaagCGCGACu -3'
miRNA:   3'- -CGCgacGCGGCgCGCCGGCA----GCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 13936 0.76 0.046078
Target:  5'- cCGCUGcCGCCaGCGUGGCCGccuUgGCGACu -3'
miRNA:   3'- cGCGAC-GCGG-CGCGCCGGC---AgCGCUG- -5'
17068 5' -64.5 NC_004333.2 + 41438 0.75 0.060549
Target:  5'- gGCGCUGCucgaCGCGggcgaguCGGCCGUCGUGAUc -3'
miRNA:   3'- -CGCGACGcg--GCGC-------GCCGGCAGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.