miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17069 5' -52.3 NC_004333.2 + 30452 0.66 0.882121
Target:  5'- aCGUCuGUUucaccGUCGACGUCACGgcugcgccuacCUUGUCg -3'
miRNA:   3'- -GCAG-CAGc----UAGCUGCAGUGU-----------GAGCAG- -5'
17069 5' -52.3 NC_004333.2 + 32618 0.66 0.874372
Target:  5'- uCG-CGUgCGGcuUCGACGUUgauGCACUCGgUCa -3'
miRNA:   3'- -GCaGCA-GCU--AGCUGCAG---UGUGAGC-AG- -5'
17069 5' -52.3 NC_004333.2 + 13108 0.66 0.866367
Target:  5'- aGUUGUCGAUguaCGGCaUCGCgaGCUgCGUCa -3'
miRNA:   3'- gCAGCAGCUA---GCUGcAGUG--UGA-GCAG- -5'
17069 5' -52.3 NC_004333.2 + 10965 0.66 0.849617
Target:  5'- uGUCGUCGGcgcaagUGACuGUCGCGCcggCGUUc -3'
miRNA:   3'- gCAGCAGCUa-----GCUG-CAGUGUGa--GCAG- -5'
17069 5' -52.3 NC_004333.2 + 9624 0.67 0.813398
Target:  5'- -cUCGccaCGAUCGGCGcCGCauugaagcaGCUCGUCg -3'
miRNA:   3'- gcAGCa--GCUAGCUGCaGUG---------UGAGCAG- -5'
17069 5' -52.3 NC_004333.2 + 26626 0.67 0.803832
Target:  5'- gCGgCGUUGAUCGuuGUCGCAC-CGcCg -3'
miRNA:   3'- -GCaGCAGCUAGCugCAGUGUGaGCaG- -5'
17069 5' -52.3 NC_004333.2 + 25346 0.67 0.803832
Target:  5'- gCGUUGcCGGUCGuuGCGUCguACAUUaCGUCg -3'
miRNA:   3'- -GCAGCaGCUAGC--UGCAG--UGUGA-GCAG- -5'
17069 5' -52.3 NC_004333.2 + 43143 0.68 0.784161
Target:  5'- gCGUC-UCGAUgugCGGCGUCACGuucggCGUCg -3'
miRNA:   3'- -GCAGcAGCUA---GCUGCAGUGUga---GCAG- -5'
17069 5' -52.3 NC_004333.2 + 20026 0.68 0.780147
Target:  5'- aGUCGggcaaagcacUCGA-CGGCGgcucgccgcccggCGCGCUCGUCg -3'
miRNA:   3'- gCAGC----------AGCUaGCUGCa------------GUGUGAGCAG- -5'
17069 5' -52.3 NC_004333.2 + 39218 0.69 0.742977
Target:  5'- uGUCGUCGAgaucggugaUCGGCaagccgaugccGUCGCGCaUGUCa -3'
miRNA:   3'- gCAGCAGCU---------AGCUG-----------CAGUGUGaGCAG- -5'
17069 5' -52.3 NC_004333.2 + 25772 0.69 0.742977
Target:  5'- --aCGUUGGUCGugGUCAUGCgcgCGaUCu -3'
miRNA:   3'- gcaGCAGCUAGCugCAGUGUGa--GC-AG- -5'
17069 5' -52.3 NC_004333.2 + 8703 0.69 0.732365
Target:  5'- cCG-CGcCGAgcUCGACGUCGCGCaUCGg- -3'
miRNA:   3'- -GCaGCaGCU--AGCUGCAGUGUG-AGCag -5'
17069 5' -52.3 NC_004333.2 + 7341 0.69 0.721651
Target:  5'- cCGUCGcgcagaGAUCGGCGUCuaa-UCGUCa -3'
miRNA:   3'- -GCAGCag----CUAGCUGCAGugugAGCAG- -5'
17069 5' -52.3 NC_004333.2 + 3035 0.69 0.699962
Target:  5'- --cCGUUGAcgGGCGUCACGCUCG-Cg -3'
miRNA:   3'- gcaGCAGCUagCUGCAGUGUGAGCaG- -5'
17069 5' -52.3 NC_004333.2 + 42782 0.7 0.64476
Target:  5'- uGUCGgucaGAUCGaACGcCGCccGCUCGUCg -3'
miRNA:   3'- gCAGCag--CUAGC-UGCaGUG--UGAGCAG- -5'
17069 5' -52.3 NC_004333.2 + 3382 0.71 0.622521
Target:  5'- --aUGUCGAcCGGCGUCGCcgUCGUCg -3'
miRNA:   3'- gcaGCAGCUaGCUGCAGUGugAGCAG- -5'
17069 5' -52.3 NC_004333.2 + 26834 0.71 0.611409
Target:  5'- gCGUCGUagCGAgugcugUCG-CGUCGCGCUCGg- -3'
miRNA:   3'- -GCAGCA--GCU------AGCuGCAGUGUGAGCag -5'
17069 5' -52.3 NC_004333.2 + 34116 0.71 0.611409
Target:  5'- cCGUCGcaUUGAUCGugaaacCGUUACuGCUCGUCg -3'
miRNA:   3'- -GCAGC--AGCUAGCu-----GCAGUG-UGAGCAG- -5'
17069 5' -52.3 NC_004333.2 + 9351 0.72 0.567238
Target:  5'- uCGUCGUCGGcgcgCGGCGUCGgGCcuucuuccUCGUUg -3'
miRNA:   3'- -GCAGCAGCUa---GCUGCAGUgUG--------AGCAG- -5'
17069 5' -52.3 NC_004333.2 + 30278 0.72 0.567238
Target:  5'- uGUCGUCGAguuUCGACGgcgagCugGCcgcCGUCg -3'
miRNA:   3'- gCAGCAGCU---AGCUGCa----GugUGa--GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.