Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17069 | 5' | -52.3 | NC_004333.2 | + | 43143 | 0.68 | 0.784161 |
Target: 5'- gCGUC-UCGAUgugCGGCGUCACGuucggCGUCg -3' miRNA: 3'- -GCAGcAGCUA---GCUGCAGUGUga---GCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 42782 | 0.7 | 0.64476 |
Target: 5'- uGUCGgucaGAUCGaACGcCGCccGCUCGUCg -3' miRNA: 3'- gCAGCag--CUAGC-UGCaGUG--UGAGCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 40306 | 0.72 | 0.534641 |
Target: 5'- -uUCGUCGAUCGguuggccggccGCGUCGCGCacuUCGUa -3' miRNA: 3'- gcAGCAGCUAGC-----------UGCAGUGUG---AGCAg -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 39218 | 0.69 | 0.742977 |
Target: 5'- uGUCGUCGAgaucggugaUCGGCaagccgaugccGUCGCGCaUGUCa -3' miRNA: 3'- gCAGCAGCU---------AGCUG-----------CAGUGUGaGCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 34116 | 0.71 | 0.611409 |
Target: 5'- cCGUCGcaUUGAUCGugaaacCGUUACuGCUCGUCg -3' miRNA: 3'- -GCAGC--AGCUAGCu-----GCAGUG-UGAGCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 32618 | 0.66 | 0.874372 |
Target: 5'- uCG-CGUgCGGcuUCGACGUUgauGCACUCGgUCa -3' miRNA: 3'- -GCaGCA-GCU--AGCUGCAG---UGUGAGC-AG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 31998 | 1.11 | 0.001603 |
Target: 5'- cCGUCGUCGAUCGACGUCACACUCGUCa -3' miRNA: 3'- -GCAGCAGCUAGCUGCAGUGUGAGCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 30452 | 0.66 | 0.882121 |
Target: 5'- aCGUCuGUUucaccGUCGACGUCACGgcugcgccuacCUUGUCg -3' miRNA: 3'- -GCAG-CAGc----UAGCUGCAGUGU-----------GAGCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 30278 | 0.72 | 0.567238 |
Target: 5'- uGUCGUCGAguuUCGACGgcgagCugGCcgcCGUCg -3' miRNA: 3'- gCAGCAGCU---AGCUGCa----GugUGa--GCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 26834 | 0.71 | 0.611409 |
Target: 5'- gCGUCGUagCGAgugcugUCG-CGUCGCGCUCGg- -3' miRNA: 3'- -GCAGCA--GCU------AGCuGCAGUGUGAGCag -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 26626 | 0.67 | 0.803832 |
Target: 5'- gCGgCGUUGAUCGuuGUCGCAC-CGcCg -3' miRNA: 3'- -GCaGCAGCUAGCugCAGUGUGaGCaG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 25772 | 0.69 | 0.742977 |
Target: 5'- --aCGUUGGUCGugGUCAUGCgcgCGaUCu -3' miRNA: 3'- gcaGCAGCUAGCugCAGUGUGa--GC-AG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 25346 | 0.67 | 0.803832 |
Target: 5'- gCGUUGcCGGUCGuuGCGUCguACAUUaCGUCg -3' miRNA: 3'- -GCAGCaGCUAGC--UGCAG--UGUGA-GCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 22639 | 0.72 | 0.534641 |
Target: 5'- uGUCGUgaCGA-CGGCGgguuucaccgCGCGCUCGUCg -3' miRNA: 3'- gCAGCA--GCUaGCUGCa---------GUGUGAGCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 20026 | 0.68 | 0.780147 |
Target: 5'- aGUCGggcaaagcacUCGA-CGGCGgcucgccgcccggCGCGCUCGUCg -3' miRNA: 3'- gCAGC----------AGCUaGCUGCa------------GUGUGAGCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 13898 | 0.74 | 0.422208 |
Target: 5'- cCGUCGUCGAaccgUCGcCGUCGCug-CGUCu -3' miRNA: 3'- -GCAGCAGCU----AGCuGCAGUGugaGCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 13108 | 0.66 | 0.866367 |
Target: 5'- aGUUGUCGAUguaCGGCaUCGCgaGCUgCGUCa -3' miRNA: 3'- gCAGCAGCUA---GCUGcAGUG--UGA-GCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 10965 | 0.66 | 0.849617 |
Target: 5'- uGUCGUCGGcgcaagUGACuGUCGCGCcggCGUUc -3' miRNA: 3'- gCAGCAGCUa-----GCUG-CAGUGUGa--GCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 9624 | 0.67 | 0.813398 |
Target: 5'- -cUCGccaCGAUCGGCGcCGCauugaagcaGCUCGUCg -3' miRNA: 3'- gcAGCa--GCUAGCUGCaGUG---------UGAGCAG- -5' |
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17069 | 5' | -52.3 | NC_004333.2 | + | 9351 | 0.72 | 0.567238 |
Target: 5'- uCGUCGUCGGcgcgCGGCGUCGgGCcuucuuccUCGUUg -3' miRNA: 3'- -GCAGCAGCUa---GCUGCAGUgUG--------AGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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